Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C3026_RS01165 Genome accession   NZ_CP014272
Coordinates   238919..239395 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli K-12 strain K-12 C3026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 233919..244395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3026_RS01140 (C3026_01150) proB 235051..236154 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  C3026_RS01145 (C3026_01155) proA 236166..237419 (+) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  C3026_RS01155 (C3026_01165) ykfI 237991..238332 (-) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  C3026_RS01160 (C3026_01170) yafW 238353..238670 (-) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  C3026_RS25020 - 238689..238910 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  C3026_RS01165 (C3026_01175) radC 238919..239395 (-) 477 WP_000811693.1 JAB domain-containing protein Machinery gene
  C3026_RS01170 (C3026_01180) - 239411..239869 (-) 459 WP_000211838.1 antirestriction protein -
  C3026_RS01175 (C3026_01185) - 239967..240206 (-) 240 WP_000194654.1 DUF905 domain-containing protein -
  C3026_RS01180 (C3026_01190) ykfB 240283..240750 (-) 468 WP_001547765.1 protein YkfB -
  C3026_RS27800 (C3026_01195) yafY 240773..241216 (-) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  C3026_RS27805 (C3026_01200) ypjK 241216..241455 (-) 240 WP_032243554.1 protein YpjK -
  C3026_RS27810 - 241430..241630 (-) 201 Protein_229 DeoR family transcriptional regulator -
  C3026_RS01195 (C3026_01205) yafZ 241847..242668 (-) 822 WP_000197389.1 DUF932 domain-containing protein -
  C3026_RS01200 (C3026_01210) ykfA 242760..243623 (-) 864 WP_001065553.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=145226 C3026_RS01165 WP_000811693.1 238919..239395(-) (radC) [Escherichia coli K-12 strain K-12 C3026]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=145226 C3026_RS01165 WP_000811693.1 238919..239395(-) (radC) [Escherichia coli K-12 strain K-12 C3026]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38