Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | DHB4_RS26025 | Genome accession | NZ_CP014270 |
| Coordinates | 1982777..1983223 (+) | Length | 148 a.a. |
| NCBI ID | WP_000187523.1 | Uniprot ID | P76362 |
| Organism | Escherichia coli K-12 strain K-12 DHB4 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1977777..1988223
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DHB4_RS10030 (DHB4_10060) | agn43 | 1978008..1981127 (+) | 3120 | WP_000820410.1 | autotransporter adhesin Ag43 | - |
| DHB4_RS10035 (DHB4_10065) | yeeR | 1981248..1982780 (+) | 1533 | WP_001350525.1 | protein YeeR | - |
| DHB4_RS26025 (DHB4_10070) | radC | 1982777..1983223 (+) | 447 | WP_000187523.1 | JAB domain-containing protein | Machinery gene |
| DHB4_RS10045 (DHB4_10075) | yeeT | 1983286..1983507 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| DHB4_RS10050 (DHB4_10080) | cbeA | 1983581..1983949 (+) | 369 | WP_001285584.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| DHB4_RS10055 (DHB4_10085) | cbtA | 1984038..1984412 (+) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| DHB4_RS10060 (DHB4_10090) | yeeW | 1984409..1984603 (+) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| DHB4_RS26950 (DHB4_10095) | - | 1984637..1984729 (+) | 93 | Protein_1936 | DUF957 domain-containing protein | - |
| DHB4_RS24650 | - | 1985018..1985146 (-) | 129 | Protein_1937 | transposase domain-containing protein | - |
| DHB4_RS10070 (DHB4_10100) | - | 1985218..1985400 (+) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| DHB4_RS10075 (DHB4_10105) | tmaR | 1985501..1985830 (-) | 330 | WP_000450409.1 | DUF496 family protein | - |
| DHB4_RS10080 (DHB4_10110) | yeeA | 1986002..1987060 (-) | 1059 | WP_001200891.1 | FUSC family protein | - |
| DHB4_RS10085 (DHB4_10115) | sbmC | 1987258..1987731 (-) | 474 | WP_001105415.1 | DNA gyrase inhibitor SbmC | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16556.98 Da Isoelectric Point: 7.6151
>NTDB_id=145223 DHB4_RS26025 WP_000187523.1 1982777..1983223(+) (radC) [Escherichia coli K-12 strain K-12 DHB4]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 447 bp
>NTDB_id=145223 DHB4_RS26025 WP_000187523.1 1982777..1983223(+) (radC) [Escherichia coli K-12 strain K-12 DHB4]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
76.351 |
0.419 |