Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CD56_RS06355 Genome accession   NZ_CP011372
Coordinates   1225992..1226912 (-) Length   306 a.a.
NCBI ID   WP_047208539.1    Uniprot ID   -
Organism   Campylobacter lari strain Slaughter Beach     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220992..1231912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD56_RS06335 (CD56_06320) cysK 1221973..1222875 (-) 903 WP_047208538.1 cysteine synthase A -
  CD56_RS06340 (CD56_06325) - 1222973..1223275 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  CD56_RS08115 - 1223367..1223993 (-) 627 WP_144411996.1 hypothetical protein -
  CD56_RS08120 - 1224140..1224484 (-) 345 WP_052768387.1 hypothetical protein -
  CD56_RS06350 (CD56_06335) - 1224493..1225991 (-) 1499 Protein_1249 MBOAT family O-acyltransferase -
  CD56_RS06355 (CD56_06340) waaF 1225992..1226912 (-) 921 WP_047208539.1 lipopolysaccharide heptosyltransferase II Regulator
  CD56_RS06360 (CD56_06345) - 1226965..1227789 (+) 825 WP_047208540.1 glycosyltransferase family 2 protein -
  CD56_RS06365 (CD56_06350) - 1227769..1228485 (-) 717 WP_047208541.1 cytidylyltransferase domain-containing protein -
  CD56_RS06370 (CD56_06355) - 1228472..1229502 (-) 1031 Protein_1253 nucleotidyltransferase family protein -
  CD56_RS06375 (CD56_06360) neuC 1229499..1230658 (-) 1160 Protein_1254 UDP-N-acetylglucosamine 2-epimerase -
  CD56_RS06380 (CD56_06365) neuB 1230648..1231659 (-) 1012 Protein_1255 N-acetylneuraminate synthase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34830.03 Da        Isoelectric Point: 10.3758

>NTDB_id=145208 CD56_RS06355 WP_047208539.1 1225992..1226912(-) (waaF) [Campylobacter lari strain Slaughter Beach]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILKLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EAIYFARVAKEFSSTRQILIFGVESEREICDEIERFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLDLACMPCMQKVCPLKHHKCMKDLKPDVVINLARNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=145208 CD56_RS06355 WP_047208539.1 1225992..1226912(-) (waaF) [Campylobacter lari strain Slaughter Beach]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCTGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAATCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGCAAGATTATTTTAAAACTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCAATCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCGTCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCTCA
TCTTGATCTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
ATGTGGTGATAAATTTAGCAAGAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.217

100

0.657

Multiple sequence alignment