Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CD56_RS01585 Genome accession   NZ_CP011372
Coordinates   288084..289262 (+) Length   392 a.a.
NCBI ID   WP_047208002.1    Uniprot ID   -
Organism   Campylobacter lari strain Slaughter Beach     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 283084..294262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD56_RS01570 (CD56_01565) - 283797..284522 (+) 726 WP_047208000.1 class II aldolase/adducin family protein -
  CD56_RS01575 (CD56_01570) - 284524..286020 (+) 1497 WP_047208751.1 sugar phosphate nucleotidyltransferase -
  CD56_RS01580 (CD56_01575) - 286057..288087 (+) 2031 WP_047208001.1 capsular polysaccharide biosynthesis protein -
  CD56_RS01585 (CD56_01580) kpsS 288084..289262 (+) 1179 WP_047208002.1 capsule biosynthesis protein Regulator
  CD56_RS08350 (CD56_01585) - 289259..290767 (-) 1509 WP_047208003.1 SGNH/GDSL hydrolase family protein -
  CD56_RS01595 (CD56_01590) - 290931..292061 (+) 1131 WP_047208004.1 hypothetical protein -
  CD56_RS01600 (CD56_01595) - 292071..293444 (+) 1374 WP_047208005.1 cytochrome P450 -
  CD56_RS01605 (CD56_01600) - 293441..293794 (+) 354 WP_039625388.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46445.08 Da        Isoelectric Point: 10.1995

>NTDB_id=145198 CD56_RS01585 WP_047208002.1 288084..289262(+) (kpsS) [Campylobacter lari strain Slaughter Beach]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPQAKVYKVNFNGGDFFFYPFKSINYTKSLAELEDFYKKLFEEKQIQV
IIMYNDCRKVHEIAISVAKQMGIEVWIFEEGYVRPNFITFEKDGVNANSTLPREKEFYLSQKKFNKDFKFKTFSSTFRNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFVNHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYIHDLHLPTLLINTRGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYKKSLHTFWKECRAYKPDVVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=145198 CD56_RS01585 WP_047208002.1 288084..289262(+) (kpsS) [Campylobacter lari strain Slaughter Beach]
ATGAATTTAAGTAAGAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTCCAAGGACCTGTGGGTGGATTTTTTCG
TAAAATCGCTACAAAAATTCCACAAGCTAAGGTTTATAAAGTAAATTTTAATGGCGGAGATTTTTTCTTTTATCCTTTTA
AAAGCATTAACTATACTAAAAGCTTAGCTGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCATTATGTATAATGATTGTAGAAAAGTGCATGAAATAGCCATTAGTGTTGCTAAACAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATGTAAGACCAAATTTTATTACTTTTGAAAAAGATGGAGTAAATGCAAACTCCACTTTGCCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTAATAAAGATTTTAAATTTAAAACTTTCTCAAGTACTTTTAGAAATATG
GCCTTTGCTTCGTTTTTATACTGGCTTTTTGCTTTTTTGTTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGCTTTGTTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCCCTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCATAATGATACTCAACTCTCCCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATCATCTCTTTTGTTAATCATGCTAAAGCAAAGTCTTATCTAGTTTT
TAAACATCATCCTATGGACCGTGGCTATAGAGATTATACTAAGCTTATAGAAGATTTGAGTTTAAAATACAATGTCGAGG
GTAGAATTTTATATATACATGACTTACACTTACCTACACTCTTAATCAATACAAGAGGCACTATAGTGATAAATAGCACA
GTAGGGCTTTCTGCTTTATATCACAATAGTCCTTTAAAAGTTATGGGAAAAGCCTTTTATGATATAGAAGGTTTGACTTA
CAAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCTGATGTGGTTTTACATGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTCAATGGGAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.266

100

0.617

Multiple sequence alignment