Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAW51_RS26675 Genome accession   NZ_CP011371
Coordinates   6251460..6252824 (+) Length   454 a.a.
NCBI ID   WP_047198356.1    Uniprot ID   -
Organism   Caldimonas brevitalea strain DSM 7029     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6246460..6257824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAW51_RS26655 (AAW51_5353) alr 6247631..6248740 (+) 1110 WP_047197040.1 alanine racemase -
  AAW51_RS26660 (AAW51_5354) - 6248785..6250329 (-) 1545 WP_169788093.1 PLP-dependent aminotransferase family protein -
  AAW51_RS26665 (AAW51_5355) - 6250506..6250850 (+) 345 WP_047197041.1 DUF2917 domain-containing protein -
  AAW51_RS26670 (AAW51_5356) - 6250933..6251415 (+) 483 WP_047197042.1 acyl-CoA thioesterase -
  AAW51_RS26675 (AAW51_5357) radA 6251460..6252824 (+) 1365 WP_047198356.1 DNA repair protein RadA Machinery gene
  AAW51_RS26680 (AAW51_5358) - 6252918..6253253 (+) 336 WP_047197043.1 antibiotic biosynthesis monooxygenase family protein -
  AAW51_RS26685 (AAW51_5359) - 6253315..6254097 (+) 783 WP_047197044.1 metallophosphoesterase family protein -
  AAW51_RS26690 (AAW51_5360) - 6254131..6254886 (-) 756 WP_157360079.1 hypothetical protein -
  AAW51_RS26695 (AAW51_5361) - 6255188..6255580 (+) 393 WP_047197046.1 hypothetical protein -
  AAW51_RS26700 (AAW51_5362) - 6255883..6257130 (+) 1248 WP_047197047.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48023.55 Da        Isoelectric Point: 7.1119

>NTDB_id=145191 AAW51_RS26675 WP_047198356.1 6251460..6252824(+) (radA) [Caldimonas brevitalea strain DSM 7029]
MAKEKTLYTCSECGGTSPKWLGKCPQCGAWNTLEETVAESGTRHRFQALAKSAPVTSLAEIEAVDVARMPTGIDELDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQALDALSQQMKALYVTGEESGAQVALRSRRLGLDGSKVLVQAEIQLEKILATIEA
ERPAVAVIDSIQTVYSEQLTSAPGSVAQVRECSAQLTRTAKATGCSMVLVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SAFRLVRAFKNRFGAVNEIGVFAMTERGLKGVANPSAIFLSTHGEPVPGSCVLVTLEGTRPMLVEVQALVDSSPIPSPRR
LSVGLEQNRLAMLLAVMHRHAGIACFDQDVFVNAVGGVRISEPAADLAVMLAIQSSLRGKPLPRGFLTFGEVGLAGEVRP
APRGQERLKEAAKLGFSVAVVPKANLPKKPIEGLEIHPVERVEQAIDLVRTLGG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=145191 AAW51_RS26675 WP_047198356.1 6251460..6252824(+) (radA) [Caldimonas brevitalea strain DSM 7029]
ATGGCCAAAGAAAAGACGCTCTACACCTGCTCCGAATGCGGCGGCACCAGCCCCAAATGGCTGGGCAAATGCCCGCAGTG
CGGCGCCTGGAACACGCTCGAGGAGACCGTGGCCGAGAGTGGCACCCGACACCGTTTCCAGGCGCTGGCCAAGTCGGCGC
CGGTCACCTCGCTGGCCGAGATCGAAGCGGTCGACGTCGCGCGCATGCCCACCGGCATCGACGAGCTGGACCGGGTGCTG
GGCGGCGGCCTGGTGCCGGGCGGCGTGGTGCTGATCGGGGGCGATCCGGGCATCGGCAAGTCGACCTTGCTGCTGCAGGC
GCTCGATGCGCTGTCGCAGCAGATGAAGGCGCTCTACGTGACCGGCGAAGAATCCGGCGCCCAGGTGGCGCTGCGCTCGC
GCCGTCTCGGCCTCGACGGCTCCAAGGTGCTCGTGCAGGCGGAGATCCAGCTCGAGAAAATCCTGGCGACCATCGAAGCC
GAGCGGCCGGCCGTGGCCGTGATCGACTCGATCCAGACCGTTTATTCCGAGCAGCTCACCTCGGCGCCCGGTTCGGTGGC
CCAGGTGCGCGAGTGCTCGGCCCAGCTGACGCGTACCGCCAAGGCCACCGGCTGCTCGATGGTGCTGGTCGGCCACGTGA
CCAAGGAGGGCTCGCTCGCCGGGCCGCGCGTGCTGGAGCACATCGTCGACACCGTGCTGTACTTCGAGGGCGACACCCAC
AGCGCCTTCCGGCTGGTGCGCGCCTTCAAGAACCGGTTCGGCGCGGTCAACGAGATCGGCGTGTTCGCGATGACCGAGCG
CGGCCTGAAGGGCGTGGCCAACCCGAGCGCCATCTTTTTGTCGACCCACGGCGAACCGGTGCCCGGCTCGTGCGTGCTGG
TCACGCTGGAAGGCACGCGCCCGATGCTGGTCGAGGTGCAGGCACTGGTCGACAGCTCGCCCATCCCCAGCCCGCGCCGA
CTCAGCGTCGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCCGTGATGCACCGGCACGCCGGCATCGCCTGTTTCGA
CCAGGACGTGTTCGTCAATGCGGTCGGCGGCGTGCGCATCAGCGAGCCGGCCGCCGACCTGGCGGTGATGCTGGCGATCC
AGAGTTCGCTGCGGGGCAAGCCGCTGCCGCGCGGTTTTCTGACCTTCGGCGAGGTGGGGCTGGCCGGCGAGGTGCGACCG
GCGCCGCGTGGCCAGGAGCGCTTGAAAGAAGCGGCCAAGCTCGGCTTCTCGGTCGCCGTGGTGCCCAAGGCCAACCTGCC
CAAGAAGCCCATCGAAGGGTTGGAGATCCACCCGGTCGAGCGGGTGGAGCAGGCCATCGACCTGGTCCGCACGCTGGGCG
GCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(356-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.922

100

0.5
  radA Streptococcus mitis NCTC 12261

46.875

98.678

0.463
  radA Streptococcus pneumoniae Rx1

48.364

94.273

0.456
  radA Streptococcus pneumoniae D39

48.364

94.273

0.456
  radA Streptococcus pneumoniae R6

48.364

94.273

0.456
  radA Streptococcus pneumoniae TIGR4

48.364

94.273

0.456
  radA Streptococcus mitis SK321

48.364

94.273

0.456

Multiple sequence alignment