Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AAW51_RS01060 Genome accession   NZ_CP011371
Coordinates   242544..244058 (-) Length   504 a.a.
NCBI ID   WP_047193141.1    Uniprot ID   A0A0G3BG16
Organism   Caldimonas brevitalea strain DSM 7029     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 237544..249058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAW51_RS01040 (AAW51_0208) - 238184..238891 (+) 708 WP_047193139.1 TenA family transcriptional regulator -
  AAW51_RS01045 (AAW51_0209) - 239168..239962 (+) 795 WP_047197243.1 aldolase -
  AAW51_RS01050 (AAW51_0210) - 240138..241250 (+) 1113 WP_053013228.1 alpha/beta hydrolase -
  AAW51_RS01055 (AAW51_0211) - 241312..242547 (-) 1236 WP_047193140.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  AAW51_RS01060 (AAW51_0212) rpoN/rpoN1 242544..244058 (-) 1515 WP_047193141.1 RNA polymerase factor sigma-54 Machinery gene
  AAW51_RS01065 (AAW51_0213) lptB 244058..244831 (-) 774 WP_047193142.1 LPS export ABC transporter ATP-binding protein -
  AAW51_RS01070 (AAW51_0214) lptA 244842..245477 (-) 636 WP_083438639.1 lipopolysaccharide transport periplasmic protein LptA -
  AAW51_RS01075 (AAW51_0215) - 245633..246307 (-) 675 WP_053013229.1 thiol:disulfide interchange protein DsbA/DsbL -
  AAW51_RS01080 (AAW51_0216) - 246385..247029 (-) 645 WP_047193143.1 SPOR domain-containing protein -
  AAW51_RS01085 (AAW51_0217) argS 247109..248791 (-) 1683 WP_047193144.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 56252.72 Da        Isoelectric Point: 4.6412

>NTDB_id=145179 AAW51_RS01060 WP_047193141.1 242544..244058(-) (rpoN/rpoN1) [Caldimonas brevitalea strain DSM 7029]
MKPSLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEPDDDYSAEAAAAAAAERPVTREQTQTADAEHN
DSAEAPDAAASVDSVEFGATEREDWENGTERDDFDGIRETPSNRNGAIDDDDLDPIDRAAPGISLQDHLRQQLRGMRLEP
SDMAAVMVLIESLDEDGYLADPLEEIAERLAEDEEEREELLERLQCALRWLHNMEPTGVGARNLCECLSLQLRALPRSEA
QIIALMICKSCLDALAKRDIKKLMAATGADEELIKQAQTLIVSLEPKPGRPFVRAEANIVVPDVIVQKSGRNWKVVLNPD
VMPKLRINDLYAQAIKQQRSGDSGQALSARLQEARWFMKNIQQRFETIQRVSQAIVERQKNFFTHGEIAMKPLVLREIAD
ELGLHESTISRVTTAKYMSTPFGTFELKYFFGSSLNTEAGGNASSTAVRALIKQLVAAEDPKKPLSDSQLSLMLEEQGIQ
VARRTVAKYREALKIAPANLRKSL

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=145179 AAW51_RS01060 WP_047193141.1 242544..244058(-) (rpoN/rpoN1) [Caldimonas brevitalea strain DSM 7029]
ATGAAGCCCTCGCTGCAAGTCCGCCTGTCCCAGCACCTGGCGCTGACGCCCCAGCTGCAGCAATCGATCCGCTTGCTGCA
GCTGTCGACGCTCGAACTCCACCAGGAGGTCGAGCAGATGCTGGAGCAGAACCCGTTTCTCGAGCCCGATGACGACTACT
CGGCCGAGGCGGCTGCAGCGGCCGCGGCCGAGCGCCCCGTGACGCGCGAGCAGACCCAGACCGCCGACGCTGAACACAAC
GACAGCGCCGAGGCGCCCGACGCCGCGGCCAGCGTCGACAGCGTCGAGTTCGGCGCCACCGAGCGCGAAGACTGGGAGAA
CGGCACCGAACGCGACGACTTCGACGGCATCCGCGAAACGCCCAGCAACCGCAACGGCGCGATCGACGACGACGACCTCG
ACCCGATCGACCGGGCCGCGCCCGGTATCAGCCTGCAGGACCATTTGCGCCAGCAGCTGCGCGGCATGCGCCTGGAGCCG
TCGGACATGGCCGCGGTGATGGTGCTGATCGAGTCGCTCGACGAAGACGGCTACCTCGCCGACCCGCTCGAGGAGATCGC
CGAGCGCCTCGCCGAGGACGAGGAAGAGCGCGAGGAACTGCTCGAACGGCTGCAGTGCGCGTTGCGCTGGCTGCACAACA
TGGAGCCGACCGGCGTCGGCGCGCGCAACCTGTGCGAATGCCTGTCGCTGCAGCTGCGCGCCTTGCCGCGCAGCGAGGCC
CAGATCATCGCGCTGATGATCTGCAAGAGCTGCCTCGATGCGCTGGCCAAGCGCGACATCAAGAAGCTGATGGCCGCGAC
CGGGGCCGACGAAGAGCTGATCAAGCAGGCGCAGACCCTGATCGTCTCGCTCGAGCCCAAGCCCGGCCGGCCTTTCGTTC
GGGCCGAAGCCAACATCGTCGTGCCCGATGTCATCGTGCAGAAGTCGGGCCGCAACTGGAAGGTGGTGCTGAACCCCGAC
GTGATGCCCAAGCTGCGCATCAACGACCTCTACGCGCAGGCGATCAAGCAGCAGCGCTCCGGCGACAGCGGTCAGGCCTT
GAGTGCGCGGCTGCAGGAAGCGCGCTGGTTCATGAAAAACATCCAGCAGCGCTTCGAGACCATCCAGCGCGTCTCGCAGG
CCATCGTCGAGCGGCAGAAGAATTTCTTCACCCACGGCGAGATCGCGATGAAGCCGCTGGTGCTGCGTGAAATCGCCGAC
GAGCTGGGCCTGCACGAATCGACCATCTCGCGCGTGACCACCGCCAAGTACATGTCCACGCCCTTCGGCACCTTCGAGTT
GAAGTATTTCTTCGGCTCCTCGCTGAACACCGAAGCCGGCGGCAATGCGTCCAGCACCGCGGTGCGGGCGCTGATCAAGC
AGCTGGTGGCGGCCGAAGATCCCAAGAAGCCGCTGTCGGACAGCCAGCTCAGCCTGATGCTCGAAGAGCAGGGCATCCAG
GTGGCACGGCGCACCGTCGCCAAATACCGCGAAGCGCTGAAGATCGCGCCCGCCAATCTGCGCAAGAGCCTGTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-331)

Sigma-54, DNA binding domain (Sigma54_DBD)

(347-502)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.792

100

0.573

Multiple sequence alignment