Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TVD_RS11800 Genome accession   NZ_CP011367
Coordinates   2550061..2551407 (+) Length   448 a.a.
NCBI ID   WP_047251676.1    Uniprot ID   A0A0G3G8U0
Organism   Thioalkalivibrio versutus strain D301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2545061..2556407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TVD_RS11775 (TVD_11775) rimM 2545340..2545849 (-) 510 WP_047251674.1 ribosome maturation factor RimM -
  TVD_RS11780 (TVD_11780) rpsP 2545887..2546150 (-) 264 WP_018145315.1 30S ribosomal protein S16 -
  TVD_RS11785 (TVD_11785) ffh 2546286..2547674 (-) 1389 WP_018145314.1 signal recognition particle protein -
  TVD_RS11790 (TVD_11790) - 2547874..2548674 (+) 801 WP_018169176.1 cytochrome C assembly family protein -
  TVD_RS11795 (TVD_11795) - 2548775..2550061 (+) 1287 WP_047251675.1 HlyC/CorC family transporter -
  TVD_RS11800 (TVD_11800) radA 2550061..2551407 (+) 1347 WP_047251676.1 DNA repair protein RadA Machinery gene
  TVD_RS14970 (TVD_11805) - 2551817..2552023 (+) 207 WP_026330526.1 hypothetical protein -
  TVD_RS11810 (TVD_11810) - 2552357..2552968 (-) 612 WP_018169074.1 DUF3501 family protein -
  TVD_RS11815 (TVD_11815) - 2553016..2553318 (-) 303 WP_017940767.1 encapsulin-associated ferritin-like protein -
  TVD_RS11820 (TVD_11820) - 2553384..2554736 (-) 1353 WP_018145309.1 heterodisulfide reductase-related iron-sulfur binding cluster -
  TVD_RS11825 (TVD_11825) - 2554893..2555312 (-) 420 WP_018145308.1 rubrerythrin family protein -
  TVD_RS11830 (TVD_11830) - 2555550..2555855 (+) 306 WP_047251677.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 47438.71 Da        Isoelectric Point: 7.4263

>NTDB_id=145166 TVD_RS11800 WP_047251676.1 2550061..2551407(+) (radA) [Thioalkalivibrio versutus strain D301]
MAKSKTQYVCQSCGAISPKWAGQCGDCGAWNTLEEAAPAASAGPRGGYAGAVAGITRLGEVELAEVPRTSTGLSELDRAL
GGGLVHGSVVLLGGDPGIGKSTLLLQTLAMLPIGDTLYVTGEESAQQIGMRARRLGLEVDGLRLLTETQVENVIATCERE
RPRVLVIDSIQTLYTAALQSAPGSVGQVRESAAALVRMAKQRGITVILVGHVTKDGQLAGPRVLEHMVDTVLYFEGDPDG
RYRMLRAVKNRFGAVNELGVFAMLENGLKAVSNPSAIFLSRHQGPVPGSVVMVTREGTRPLLVEVQALVAESHASQPRRI
TVGLEQNRLTMLLAVLHRHGGVALFDQDVFINVVGGVRVTETAADLPMLAAALSSFRDRALPQELLAFGEVGLAGEIRPV
PNGEERLREAAKHGYTRAIAPAANAPRKPIKGMEVIPVARLSEVLDAL

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=145166 TVD_RS11800 WP_047251676.1 2550061..2551407(+) (radA) [Thioalkalivibrio versutus strain D301]
ATGGCAAAGAGCAAGACCCAGTACGTATGCCAGTCCTGCGGCGCGATCAGCCCCAAGTGGGCCGGCCAGTGCGGCGACTG
CGGCGCCTGGAACACCCTGGAGGAGGCCGCTCCGGCGGCCAGCGCAGGCCCGCGCGGCGGGTACGCCGGCGCGGTCGCCG
GCATTACCCGTCTGGGCGAAGTCGAGCTGGCCGAGGTACCGCGCACCAGCACCGGGTTATCGGAGCTGGATCGCGCCCTG
GGGGGCGGCCTGGTCCACGGGTCAGTGGTGCTGCTGGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCTGCAGAC
CCTGGCCATGCTGCCCATCGGCGACACGCTCTACGTGACCGGCGAGGAATCGGCCCAACAGATCGGCATGCGCGCCCGGC
GCCTGGGCCTGGAGGTCGACGGGCTGCGCCTGCTGACCGAGACCCAGGTCGAGAACGTGATCGCCACCTGCGAACGCGAG
CGCCCGCGCGTACTGGTAATCGACTCCATCCAGACGCTCTACACCGCTGCGCTGCAGTCCGCCCCCGGCTCGGTCGGCCA
GGTGCGCGAAAGCGCCGCGGCCCTGGTGCGCATGGCCAAGCAGCGCGGTATCACCGTGATCCTGGTCGGGCACGTGACCA
AGGACGGCCAGCTCGCCGGGCCACGCGTGCTGGAGCACATGGTCGATACGGTGCTCTATTTCGAGGGCGACCCGGACGGG
CGCTATCGCATGCTGCGCGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAGCTGGGCGTGTTCGCCATGCTGGAGAACGG
CTTGAAGGCCGTCTCCAACCCGTCCGCGATCTTCCTGTCACGTCACCAGGGGCCGGTGCCCGGCAGCGTCGTCATGGTTA
CCCGCGAGGGCACGCGCCCGTTGCTGGTCGAGGTGCAGGCGCTGGTCGCCGAGAGCCATGCCTCGCAGCCGCGGCGGATC
ACCGTAGGGCTGGAGCAGAACCGCCTGACCATGCTCCTGGCCGTGCTGCATCGCCACGGCGGCGTGGCCCTGTTCGACCA
GGACGTGTTCATCAACGTGGTGGGCGGCGTGCGCGTAACAGAGACTGCCGCCGACCTGCCGATGCTGGCGGCCGCGCTCT
CCAGCTTCCGTGATCGCGCCCTGCCGCAGGAGCTGCTGGCGTTCGGCGAGGTCGGCCTGGCCGGCGAGATCCGCCCGGTC
CCGAACGGCGAGGAACGCCTGCGCGAGGCGGCCAAGCATGGCTACACCCGCGCCATCGCGCCGGCCGCCAACGCCCCACG
CAAGCCGATCAAGGGGATGGAAGTCATTCCCGTCGCGCGCCTCTCCGAAGTCCTCGACGCCCTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-217)

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3G8U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.227

100

0.498
  radA Streptococcus mitis NCTC 12261

47.461

100

0.48
  radA Streptococcus pneumoniae Rx1

47.461

100

0.48
  radA Streptococcus pneumoniae D39

47.461

100

0.48
  radA Streptococcus pneumoniae R6

47.461

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.461

100

0.48
  radA Streptococcus mitis SK321

47.461

100

0.48

Multiple sequence alignment