Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAT16_RS13420 Genome accession   NZ_CP011366
Coordinates   2651283..2652653 (-) Length   456 a.a.
NCBI ID   WP_046791278.1    Uniprot ID   A0A0F7HPI9
Organism   Salinicoccus halodurans strain H3B36 isolate soil     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2646283..2657653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAT16_RS13395 (AAT16_13400) cysE 2646659..2647315 (-) 657 WP_046791273.1 serine O-acetyltransferase -
  AAT16_RS13400 (AAT16_13405) gltX 2647590..2649041 (-) 1452 WP_046791274.1 glutamate--tRNA ligase -
  AAT16_RS13405 (AAT16_13410) ispF 2649034..2649525 (-) 492 WP_046791275.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AAT16_RS13410 (AAT16_13415) ispD 2649518..2650159 (-) 642 WP_238983765.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AAT16_RS13415 (AAT16_13420) - 2650201..2651259 (-) 1059 WP_046791277.1 PIN/TRAM domain-containing protein -
  AAT16_RS13420 (AAT16_13425) radA 2651283..2652653 (-) 1371 WP_046791278.1 DNA repair protein RadA Machinery gene
  AAT16_RS13425 (AAT16_13430) - 2652891..2653472 (+) 582 WP_074924540.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  AAT16_RS13430 (AAT16_13435) - 2653563..2656004 (-) 2442 WP_046791279.1 ATP-dependent Clp protease ATP-binding subunit -
  AAT16_RS13435 (AAT16_13440) - 2656006..2657034 (-) 1029 WP_046791280.1 protein arginine kinase -
  AAT16_RS13440 (AAT16_13445) - 2657021..2657542 (-) 522 WP_046791281.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50056.46 Da        Isoelectric Point: 6.9990

>NTDB_id=145147 AAT16_RS13420 WP_046791278.1 2651283..2652653(-) (radA) [Salinicoccus halodurans strain H3B36 isolate soil]
MAKAKNVFECMACGYESPKWAGKCPNCGAWNQMEEKLVHKETTGRGTFGKPEQQERQRSRKLDRVKQSHTPRTLTQSGEF
DRVLGGGIVDGSLILIGGDPGIGKSTILLQTALKLSEEHEVLYVSGEESLEQIKLRADRLLEASDNLNVYSETNLFHIHD
EIKNTKPDFLIIDSIQTIFHPDVTSAPGSVSQVRECTQSLMNIAKSGNIATFIVGHVTKEGQIAGPRMLEHMVDTVLYFE
GDQHHTYRILRAVKNRFGSTNEMGMFEMKNVGLAEVLNPSEIFLEERSKNVPGSAIVATMEGTRAMLVEVQALVTPTHFH
NPRRMATGIDHNRLSLLMAVLEKSEGLLMQQHDAYIKVAGGGKLEEPAVDLSIIVSIASSFKGAAVRGDDCFIGEVGLTG
EVRRVTKIDQRLIEAAKLGFKRAIIPSSNMKGLDVPDGIEVIGARTLKDALKAAVK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=145147 AAT16_RS13420 WP_046791278.1 2651283..2652653(-) (radA) [Salinicoccus halodurans strain H3B36 isolate soil]
ATGGCTAAAGCAAAAAACGTATTCGAATGTATGGCCTGCGGTTATGAATCACCGAAATGGGCAGGGAAATGTCCCAACTG
CGGCGCCTGGAACCAGATGGAAGAAAAACTGGTCCATAAAGAGACCACTGGCAGGGGAACATTCGGTAAACCTGAACAGC
AGGAGCGGCAGCGCAGCCGGAAGCTCGACCGTGTCAAACAGAGTCATACGCCAAGGACACTTACCCAGAGCGGCGAGTTC
GACCGTGTGCTTGGCGGCGGTATTGTGGACGGTTCACTGATACTCATCGGCGGAGACCCCGGCATTGGTAAATCTACAAT
TTTACTGCAGACTGCTTTGAAATTATCTGAAGAACATGAAGTGCTTTATGTTTCTGGTGAGGAATCACTCGAGCAGATAA
AATTACGGGCTGACCGTCTGCTTGAAGCAAGTGATAATCTTAATGTATACAGTGAAACGAACCTCTTCCATATCCACGAT
GAAATCAAAAATACCAAACCCGATTTTCTCATCATTGACTCCATACAGACAATATTCCATCCGGATGTCACAAGTGCCCC
GGGCAGTGTCTCCCAAGTCCGTGAATGTACACAAAGCCTTATGAATATCGCAAAGAGCGGCAATATTGCAACGTTCATCG
TCGGCCATGTGACGAAGGAAGGTCAGATAGCCGGTCCGAGGATGCTGGAGCATATGGTGGACACAGTGCTCTATTTCGAA
GGGGACCAGCATCATACCTATCGTATTCTAAGGGCAGTCAAAAACCGTTTCGGTTCAACGAACGAAATGGGCATGTTCGA
AATGAAGAACGTCGGCCTTGCGGAAGTATTGAATCCGTCGGAAATCTTTTTGGAGGAGCGTTCCAAAAACGTACCGGGTT
CAGCGATTGTTGCAACAATGGAAGGAACACGGGCGATGCTTGTGGAAGTGCAGGCCCTCGTCACACCCACGCATTTCCAT
AACCCGAGGCGGATGGCGACGGGGATAGATCACAACCGGCTGTCGCTTCTCATGGCGGTGCTGGAGAAAAGCGAAGGGCT
GCTCATGCAGCAGCACGATGCCTATATCAAAGTTGCCGGCGGTGGGAAGCTGGAAGAGCCGGCGGTGGACTTGAGCATCA
TTGTCAGCATCGCATCGAGCTTCAAAGGTGCAGCCGTACGCGGCGACGACTGTTTCATCGGTGAAGTCGGACTGACCGGT
GAGGTAAGAAGAGTAACGAAAATTGACCAGAGATTGATCGAAGCGGCGAAACTCGGATTTAAACGCGCAATCATTCCGTC
TTCGAATATGAAGGGGCTGGATGTCCCTGATGGGATTGAAGTCATCGGTGCGCGCACGTTGAAGGATGCCTTGAAAGCGG
CAGTGAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7HPI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

63.596

100

0.636
  radA Streptococcus pneumoniae Rx1

57.734

100

0.581
  radA Streptococcus pneumoniae D39

57.734

100

0.581
  radA Streptococcus pneumoniae R6

57.734

100

0.581
  radA Streptococcus pneumoniae TIGR4

57.734

100

0.581
  radA Streptococcus mitis NCTC 12261

57.734

100

0.581
  radA Streptococcus mitis SK321

57.734

100

0.581

Multiple sequence alignment