Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAT16_RS02555 Genome accession   NZ_CP011366
Coordinates   498182..499150 (+) Length   322 a.a.
NCBI ID   WP_046789390.1    Uniprot ID   A0A0F7HJF2
Organism   Salinicoccus halodurans strain H3B36 isolate soil     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 493182..504150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAT16_RS02530 (AAT16_02535) - 493670..494275 (+) 606 WP_046789385.1 riboflavin synthase -
  AAT16_RS02535 (AAT16_02540) ribB 494268..495440 (+) 1173 WP_046789386.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  AAT16_RS02540 (AAT16_02545) ribE 495455..495922 (+) 468 WP_046789387.1 6,7-dimethyl-8-ribityllumazine synthase -
  AAT16_RS02545 (AAT16_02550) - 496826..497242 (+) 417 WP_046789388.1 FixH family protein -
  AAT16_RS02550 (AAT16_02555) - 497346..498023 (+) 678 WP_046789389.1 SDR family oxidoreductase -
  AAT16_RS02555 (AAT16_02560) ceuB 498182..499150 (+) 969 WP_046789390.1 ABC transporter permease Machinery gene
  AAT16_RS02560 (AAT16_02565) - 499143..500102 (+) 960 WP_052749808.1 iron chelate uptake ABC transporter family permease subunit -
  AAT16_RS02565 (AAT16_02570) - 500099..500932 (+) 834 WP_046789391.1 ABC transporter ATP-binding protein -
  AAT16_RS02570 (AAT16_02575) - 501042..502112 (+) 1071 WP_046789392.1 siderophore ABC transporter substrate-binding protein -
  AAT16_RS02575 (AAT16_02580) murB 502179..503117 (-) 939 WP_046789393.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35101.53 Da        Isoelectric Point: 10.1497

>NTDB_id=145134 AAT16_RS02555 WP_046789390.1 498182..499150(+) (ceuB) [Salinicoccus halodurans strain H3B36 isolate soil]
MIRKLFRLDVLIVLLLIFSILSMFVGVVELRPRDLFSLTEEQQGILLNSRLPRTVSIIIAGASLAVCGLIMQQLTRNKFV
SPTTAGTMDWAQLGILIGLVFFPGVSMLGRLAFASVLAVVGTLLFMQIISRIKFKDIIFVPLIGLMLGGVVASVSTFLAI
RTNMLQAISGWMHGSFSTLIAGKYEILYISIPLFIVALLYAHQFTVAGMGEDFSKNLGLNYQKVLYIGLFITAVITALVV
VSVGMLPFLGLIVPNIVSVFRGDHLRSTIFLTAVLGAIFVMICDVIGRVVIYPYEISVGLTIAIIGGFVFLFLIFRRAGA
DA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=145134 AAT16_RS02555 WP_046789390.1 498182..499150(+) (ceuB) [Salinicoccus halodurans strain H3B36 isolate soil]
ATGATAAGAAAATTATTCAGATTAGACGTACTTATAGTTTTACTTTTGATTTTTTCTATTCTGTCTATGTTTGTAGGCGT
TGTTGAACTGCGCCCGAGGGATTTATTCAGTCTGACAGAAGAACAGCAGGGCATACTTCTCAACAGCCGGCTGCCTAGAA
CTGTATCCATTATTATCGCCGGTGCGTCACTTGCGGTCTGCGGTCTGATCATGCAGCAGCTGACACGCAACAAATTTGTC
TCTCCGACTACTGCAGGGACGATGGACTGGGCCCAGCTCGGCATCCTTATCGGCCTGGTTTTCTTTCCGGGCGTGAGCAT
GCTCGGCAGACTGGCATTTGCGTCAGTACTTGCGGTTGTCGGTACACTGCTTTTCATGCAGATCATTTCCAGAATAAAAT
TCAAAGATATCATCTTCGTTCCGCTGATTGGACTGATGCTGGGCGGCGTGGTCGCGAGCGTCAGCACATTCCTCGCAATC
AGAACGAATATGCTGCAGGCGATTTCCGGCTGGATGCACGGGAGTTTTTCAACGCTTATCGCCGGCAAATACGAAATACT
TTATATCAGCATTCCACTTTTCATAGTGGCGCTGCTGTATGCACACCAATTCACCGTCGCAGGGATGGGGGAGGACTTTT
CCAAAAACCTGGGGCTTAATTACCAGAAAGTACTATACATAGGGCTGTTCATCACAGCAGTCATCACTGCACTGGTCGTA
GTATCAGTCGGGATGCTGCCGTTCCTCGGATTGATCGTCCCGAATATCGTCTCGGTATTCAGGGGGGATCATCTCCGGAG
CACCATTTTCCTTACAGCGGTGCTTGGAGCGATATTCGTTATGATATGTGACGTAATAGGCCGTGTAGTCATTTATCCAT
ATGAGATTTCGGTGGGGCTGACCATCGCGATCATCGGCGGATTCGTCTTCTTATTCCTGATTTTCAGGAGGGCCGGTGCA
GATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7HJF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.896

98.447

0.481

Multiple sequence alignment