Detailed information NTG0145121

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C3029_RS17670
• Genome accession: NZ_CP014269
• Coordinates: 3527250..3528242 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli B strain C3029
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3522250..3533242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3029_RS17650 (C3029_17650)	otnK	3523025..3524287 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
C3029_RS17655 (C3029_17655)	ygbL	3524284..3524922 (+)	639	WP_001278994.1	aldolase	-
C3029_RS17660 (C3029_17660)	ygbM	3524927..3525703 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
C3029_RS17665 (C3029_17665)	ygbN	3525792..3527156 (+)	1365	WP_000104459.1	GntP family transporter	-
C3029_RS17670 (C3029_17670)	rpoS	3527250..3528242 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C3029_RS17675 (C3029_17675)	nlpD	3528305..3529399 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C3029_RS17680 (C3029_17680)	pcm	3529584..3530210 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C3029_RS17685 (C3029_17685)	surE	3530204..3530965 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C3029_RS17690 (C3029_17690)	truD	3530946..3531995 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C3029_RS17695 (C3029_17695)	ispF	3531992..3532471 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C3029_RS17700 (C3029_17700)	ispD	3532471..3533181 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=145121 C3029_RS17670 WP_000081550.1 3527250..3528242(-) (rpoS) [Escherichia coli B strain C3029]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=145121 C3029_RS17670 WP_000081550.1 3527250..3528242(-) (rpoS) [Escherichia coli B strain C3029]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715