Detailed information NTG0145074

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: C3029_RS01290
• Genome accession: NZ_CP014269
• Coordinates: 258828..259853 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli B strain C3029
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 253828..264853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3029_RS01260 (C3029_01260)	zapB	253912..254157 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
C3029_RS01265 (C3029_01265)	rraA	254242..254727 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
C3029_RS01270 (C3029_01270)	menA	254820..255746 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
C3029_RS01275 (C3029_01275)	hslU	255813..257144 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
C3029_RS01280 (C3029_01280)	hslV	257154..257684 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
C3029_RS01285 (C3029_01285)	ftsN	257777..258736 (-)	960	WP_000068828.1	cell division protein FtsN	-
C3029_RS01290 (C3029_01290)	cytR	258828..259853 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
C3029_RS01295 (C3029_01295)	priA	260009..262207 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
C3029_RS01300 (C3029_01300)	rpmE	262410..262622 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
C3029_RS01305 (C3029_01305)	-	262677..263300 (-)	624	WP_000720774.1	TIGR02117 family protein	-
C3029_RS01310 (C3029_01310)	yiiX	263307..263915 (-)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
C3029_RS01315 (C3029_01315)	metJ	264099..264416 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=145074 C3029_RS01290 WP_000644904.1 258828..259853(-) (cytR) [Escherichia coli B strain C3029]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=145074 C3029_RS01290 WP_000644904.1 258828..259853(-) (cytR) [Escherichia coli B strain C3029]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628