Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAV35_RS05825 Genome accession   NZ_CP011361
Coordinates   1161689..1163416 (+) Length   575 a.a.
NCBI ID   WP_008588941.1    Uniprot ID   -
Organism   Salimicrobium jeotgali strain MJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1163633..1164988 1161689..1163416 flank 217


Gene organization within MGE regions


Location: 1161689..1164988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV35_RS05825 (AAV35_005760) recN 1161689..1163416 (+) 1728 WP_008588941.1 DNA repair protein RecN Machinery gene
  AAV35_RS05835 (AAV35_005770) - 1163633..1164988 (-) 1356 WP_065757338.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65517.77 Da        Isoelectric Point: 4.6362

>NTDB_id=145068 AAV35_RS05825 WP_008588941.1 1161689..1163416(+) (recN) [Salimicrobium jeotgali strain MJ3]
MLTELTIRDFAIIDYVSLTLKDGLTVLTGETGAGKSIIIDSIQLLTGARGSVEFVKHGAKRAEIEGLFNVDGNHAVYAKG
EEYGVEIDEDGMVVLQRSITHQGKSICRVNGKLVTLGVLREFGKSLIDIHSQHETQSLMDPERHIDLLDTYAAEKLQHPK
QEYRKQYEKYRSLQKRYQELSDNEQEMAQRLDLLEFQWNELEEAHLSPKEDEELMEERNKLSNFEKIYSGLNDTYEALYG
EQKGMDWVSHAMMSLEATSDYDENYQKMSDELSNAYYVVEELTFRLSTEMEALEFDPERLNEIEERLDEINRLKRKYGQS
VEEMLEHKSKVEEEIDEINNKDSFLSKLESEINDVSEDLLLEAQHIHDIRSEAAKELVEAVHEELKDLYLEKSVFDVKVE
KRKGGKESPMMNGRQVALNSNGVDEVRFMITTNPGEPLKPLHKIASGGEMSRIMLALKQIFSRHQGITSVIFDEVDTGVS
GRVAQAIAEKIFKISVNSQVLCISHLPQVAAMADTHVQIQKNITDNTTKTNAKELDHHEKVEEVARMISGAELTETTLQN
GRELLNLAESFKAKV

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=145068 AAV35_RS05825 WP_008588941.1 1161689..1163416(+) (recN) [Salimicrobium jeotgali strain MJ3]
ATGTTAACTGAATTGACTATCAGAGATTTTGCAATTATCGATTACGTCTCTTTAACATTGAAAGATGGATTGACTGTGTT
AACCGGAGAAACGGGTGCCGGTAAATCGATTATTATTGATTCCATTCAATTACTGACGGGAGCAAGAGGCTCTGTAGAAT
TTGTAAAGCATGGAGCCAAACGTGCAGAGATAGAAGGTTTATTCAACGTAGATGGAAACCACGCTGTCTATGCTAAAGGC
GAGGAGTACGGAGTGGAAATAGATGAGGATGGTATGGTGGTGCTGCAACGCTCCATCACCCATCAGGGGAAAAGCATCTG
CCGGGTGAACGGAAAGCTGGTGACTCTCGGTGTTTTAAGGGAGTTCGGTAAATCCTTAATAGACATACACAGTCAGCACG
AAACGCAATCGCTGATGGACCCGGAACGCCATATTGATCTGCTGGATACCTATGCGGCGGAAAAGCTGCAACATCCTAAA
CAGGAATATCGGAAACAGTACGAAAAATACAGGTCTCTCCAAAAAAGATATCAGGAATTAAGTGACAACGAGCAGGAAAT
GGCACAGCGGCTCGATTTGCTGGAGTTCCAATGGAATGAACTGGAAGAAGCGCACCTTTCCCCAAAAGAAGACGAAGAAC
TGATGGAAGAAAGGAATAAGTTATCAAATTTCGAAAAAATTTATTCCGGTCTCAACGATACGTACGAAGCTTTATACGGT
GAACAAAAAGGGATGGACTGGGTTTCTCATGCTATGATGAGCCTGGAGGCGACCAGTGACTATGACGAAAACTACCAAAA
AATGTCTGATGAGCTTTCCAATGCCTATTACGTAGTGGAGGAATTGACTTTCCGGTTGAGCACGGAAATGGAAGCCCTCG
AATTCGATCCCGAGAGGTTAAATGAAATCGAAGAGAGACTCGACGAAATTAACCGTCTCAAAAGAAAGTATGGGCAGTCC
GTCGAAGAAATGCTTGAACACAAGAGTAAAGTGGAGGAAGAAATTGATGAAATTAACAATAAAGATTCGTTTCTTTCAAA
GCTTGAATCGGAAATAAATGATGTGTCGGAAGACCTCCTTCTGGAAGCTCAGCACATCCATGATATACGGAGCGAGGCTG
CTAAAGAGCTCGTAGAAGCGGTGCATGAAGAACTGAAGGACCTCTATCTCGAAAAATCCGTCTTCGATGTAAAAGTCGAG
AAAAGAAAAGGCGGAAAGGAAAGTCCCATGATGAATGGACGTCAGGTGGCTTTGAATTCGAACGGGGTTGATGAAGTAAG
GTTCATGATTACGACGAATCCGGGTGAGCCGTTGAAACCACTTCATAAGATAGCCTCCGGTGGAGAAATGTCCAGAATCA
TGCTGGCCTTAAAGCAGATCTTTTCAAGACATCAGGGGATTACCAGTGTAATCTTTGATGAAGTCGATACGGGTGTAAGC
GGGCGTGTAGCACAGGCGATAGCCGAGAAGATATTTAAGATTTCCGTTAATTCCCAGGTGCTATGCATTTCCCACCTGCC
TCAAGTTGCTGCTATGGCGGATACGCATGTGCAAATTCAAAAAAATATCACCGACAACACCACAAAAACGAACGCCAAAG
AACTCGATCACCACGAAAAAGTCGAAGAAGTTGCACGGATGATCAGCGGAGCGGAACTTACCGAGACCACACTGCAGAAC
GGCCGTGAATTACTTAATCTCGCTGAGTCGTTCAAAGCAAAAGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)

Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase (BCDHK_Adom3)

(254-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.484

99.826

0.534

Multiple sequence alignment