Detailed information NTG0145042

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C2566_RS17055
• Genome accession: NZ_CP014268
• Coordinates: 3439665..3440657 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli B strain C2566
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3434665..3445657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2566_RS17035 (C2566_17045)	otnK	3435440..3436702 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
C2566_RS17040 (C2566_17050)	ygbL	3436699..3437337 (+)	639	WP_001278994.1	aldolase	-
C2566_RS17045 (C2566_17055)	ygbM	3437342..3438118 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
C2566_RS17050 (C2566_17060)	ygbN	3438207..3439571 (+)	1365	WP_000104459.1	GntP family transporter	-
C2566_RS17055 (C2566_17065)	rpoS	3439665..3440657 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C2566_RS17060 (C2566_17070)	nlpD	3440720..3441814 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C2566_RS17065 (C2566_17075)	pcm	3441999..3442625 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C2566_RS17070 (C2566_17080)	surE	3442619..3443380 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C2566_RS17075 (C2566_17085)	truD	3443361..3444410 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C2566_RS17080 (C2566_17090)	ispF	3444407..3444886 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C2566_RS17085 (C2566_17095)	ispD	3444886..3445596 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=145042 C2566_RS17055 WP_000081550.1 3439665..3440657(-) (rpoS) [Escherichia coli B strain C2566]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=145042 C2566_RS17055 WP_000081550.1 3439665..3440657(-) (rpoS) [Escherichia coli B strain C2566]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715