Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | XI92_RS21385 | Genome accession | NZ_CP011349 |
| Coordinates | 4066278..4067321 (+) | Length | 347 a.a. |
| NCBI ID | WP_001013180.1 | Uniprot ID | A0A9X5WLU9 |
| Organism | Bacillus thuringiensis strain YC-10 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4061278..4072321
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XI92_RS21350 (XI92_21350) | - | 4061646..4062134 (+) | 489 | WP_000764261.1 | hypothetical protein | - |
| XI92_RS21355 (XI92_21355) | - | 4062169..4062480 (-) | 312 | WP_001093237.1 | hypothetical protein | - |
| XI92_RS21360 (XI92_21360) | - | 4062733..4062948 (+) | 216 | WP_001008326.1 | DUF3912 family protein | - |
| XI92_RS21365 (XI92_21365) | - | 4063036..4063428 (+) | 393 | WP_000875388.1 | hypothetical protein | - |
| XI92_RS21370 (XI92_21370) | - | 4063508..4064902 (-) | 1395 | WP_001094330.1 | L-cystine transporter | - |
| XI92_RS21375 (XI92_21375) | - | 4065009..4065251 (-) | 243 | WP_000440721.1 | DUF2626 domain-containing protein | - |
| XI92_RS21380 (XI92_21380) | - | 4065377..4066072 (-) | 696 | WP_000434125.1 | helix-turn-helix domain-containing protein | - |
| XI92_RS21385 (XI92_21385) | comGA | 4066278..4067321 (+) | 1044 | WP_001013180.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| XI92_RS21390 (XI92_21390) | comGB | 4067314..4068345 (+) | 1032 | WP_000475193.1 | competence type IV pilus assembly protein ComGB | - |
| XI92_RS21395 (XI92_21395) | comGC | 4068357..4068656 (+) | 300 | WP_001178686.1 | competence type IV pilus major pilin ComGC | - |
| XI92_RS21400 (XI92_21400) | comGD | 4068653..4069108 (+) | 456 | WP_000813142.1 | competence type IV pilus minor pilin ComGD | - |
| XI92_RS21405 (XI92_21405) | - | 4069101..4069403 (+) | 303 | WP_000829473.1 | hypothetical protein | - |
| XI92_RS21410 (XI92_21410) | comGF | 4069373..4069843 (+) | 471 | WP_000923099.1 | competence type IV pilus minor pilin ComGF | - |
| XI92_RS21415 (XI92_21415) | comGG | 4069840..4070211 (+) | 372 | WP_001231273.1 | competence type IV pilus minor pilin ComGG | - |
| XI92_RS21420 (XI92_21420) | - | 4070388..4071038 (+) | 651 | WP_000183862.1 | 2OG-Fe(II) oxygenase | - |
| XI92_RS21425 (XI92_21425) | - | 4071154..4071651 (+) | 498 | WP_000836650.1 | shikimate kinase | - |
| XI92_RS21430 (XI92_21430) | - | 4071690..4071890 (+) | 201 | WP_000106083.1 | YqzE family protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 39157.52 Da Isoelectric Point: 8.5482
>NTDB_id=145010 XI92_RS21385 WP_001013180.1 4066278..4067321(+) (comGA) [Bacillus thuringiensis strain YC-10]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGHELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEEDVYV
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGHELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEEDVYV
Nucleotide
Download Length: 1044 bp
>NTDB_id=145010 XI92_RS21385 WP_001013180.1 4066278..4067321(+) (comGA) [Bacillus thuringiensis strain YC-10]
ATGAATGGGATTGAAATTTTTGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCAGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACAGTGTATTGAAAAGGAGTTTGGAG
AAAAACTCGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGTTACTCGTGTTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAAGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGGGATGAGGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTAATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTACTATATGGACATGAGTTAAAACAAGCACTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA
ATGAATGGGATTGAAATTTTTGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCAGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACAGTGTATTGAAAAGGAGTTTGGAG
AAAAACTCGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGTTACTCGTGTTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAAGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGGGATGAGGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTAATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTACTATATGGACATGAGTTAAAACAAGCACTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
55.908 |
100 |
0.559 |