Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   XI92_RS14565 Genome accession   NZ_CP011349
Coordinates   2782299..2783426 (-) Length   375 a.a.
NCBI ID   WP_000470745.1    Uniprot ID   A0A9W5QA17
Organism   Bacillus thuringiensis strain YC-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2777299..2788426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XI92_RS14555 (XI92_14555) gyrA 2777778..2780249 (-) 2472 WP_001282864.1 DNA gyrase subunit A -
  XI92_RS14560 (XI92_14560) gyrB 2780338..2782260 (-) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  XI92_RS14565 (XI92_14565) recF 2782299..2783426 (-) 1128 WP_000470745.1 DNA replication/repair protein RecF Machinery gene
  XI92_RS14570 (XI92_14570) yaaA 2783439..2783651 (-) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  XI92_RS14575 (XI92_14575) dnaN 2783779..2784924 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  XI92_RS14580 (XI92_14580) dnaA 2785104..2786444 (-) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  XI92_RS14585 (XI92_14585) rpmH 2787009..2787143 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  XI92_RS14590 (XI92_14590) rnpA 2787220..2787567 (+) 348 WP_000726621.1 ribonuclease P protein component -
  XI92_RS14595 (XI92_14595) spoIIIJ 2787620..2788387 (+) 768 WP_000727737.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=144994 XI92_RS14565 WP_000470745.1 2782299..2783426(-) (recF) [Bacillus thuringiensis strain YC-10]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=144994 XI92_RS14565 WP_000470745.1 2782299..2783426(-) (recF) [Bacillus thuringiensis strain YC-10]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAGGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment