Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAV30_RS17430 Genome accession   NZ_CP011347
Coordinates   3673244..3673681 (+) Length   145 a.a.
NCBI ID   WP_038456921.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ11-1-4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3668244..3678681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS17415 (AAV30_17415) - 3671104..3671466 (-) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -
  AAV30_RS17420 (AAV30_17420) hxlA 3671698..3672333 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  AAV30_RS17425 (AAV30_17425) hxlB 3672330..3672887 (+) 558 WP_038456922.1 6-phospho-3-hexuloisomerase -
  AAV30_RS17430 (AAV30_17430) nucA/comI 3673244..3673681 (+) 438 WP_038456921.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAV30_RS17435 (AAV30_17435) nin/comJ 3673702..3674100 (+) 399 WP_038456919.1 competence protein ComJ Regulator
  AAV30_RS17440 (AAV30_17440) - 3674255..3674533 (-) 279 WP_263612330.1 YckD family protein -
  AAV30_RS17445 (AAV30_17445) - 3674650..3675084 (-) 435 WP_021494203.1 RDD family protein -
  AAV30_RS17450 (AAV30_17450) - 3675099..3676235 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  AAV30_RS17455 (AAV30_17455) - 3676300..3677502 (-) 1203 WP_038456918.1 GTP-binding protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16099.38 Da        Isoelectric Point: 8.4850

>NTDB_id=144961 AAV30_RS17430 WP_038456921.1 3673244..3673681(+) (nucA/comI) [Bacillus velezensis strain YJ11-1-4]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKNDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=144961 AAV30_RS17430 WP_038456921.1 3673244..3673681(+) (nucA/comI) [Bacillus velezensis strain YJ11-1-4]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAATGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment