Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAV30_RS12440 Genome accession   NZ_CP011347
Coordinates   2618642..2619106 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain YJ11-1-4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2613642..2624106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS12415 (AAV30_12415) - 2614198..2614689 (-) 492 WP_038457854.1 hypothetical protein -
  AAV30_RS12420 (AAV30_12420) fadH 2614810..2615574 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  AAV30_RS12425 (AAV30_12425) - 2615718..2616581 (+) 864 WP_038457852.1 metallophosphoesterase -
  AAV30_RS12430 (AAV30_12430) - 2616656..2617150 (+) 495 WP_088462390.1 L,D-transpeptidase family protein -
  AAV30_RS12435 (AAV30_12435) - 2617227..2618519 (+) 1293 WP_038457850.1 MFS transporter -
  AAV30_RS12440 (AAV30_12440) kre 2618642..2619106 (+) 465 WP_003154622.1 YkyB family protein Regulator
  AAV30_RS12445 (AAV30_12445) cheV 2619149..2620060 (-) 912 WP_038457848.1 chemotaxis protein CheV -
  AAV30_RS20290 - 2620249..2620410 (+) 162 WP_193427903.1 hypothetical protein -
  AAV30_RS12450 (AAV30_12450) - 2620611..2621823 (+) 1213 Protein_2517 aminotransferase A -
  AAV30_RS12455 (AAV30_12455) - 2621804..2623624 (-) 1821 WP_046702333.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=144943 AAV30_RS12440 WP_003154622.1 2618642..2619106(+) (kre) [Bacillus velezensis strain YJ11-1-4]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=144943 AAV30_RS12440 WP_003154622.1 2618642..2619106(+) (kre) [Bacillus velezensis strain YJ11-1-4]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment