Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AAV30_RS12340 Genome accession   NZ_CP011347
Coordinates   2602694..2603290 (-) Length   198 a.a.
NCBI ID   WP_038457860.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ11-1-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2597694..2608290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS12315 (AAV30_12315) mobB 2598069..2598590 (-) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AAV30_RS12320 (AAV30_12320) glp 2598551..2599843 (-) 1293 WP_038457863.1 gephyrin-like molybdotransferase Glp -
  AAV30_RS12325 (AAV30_12325) - 2599861..2600880 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  AAV30_RS12330 (AAV30_12330) - 2600932..2601534 (-) 603 WP_007611112.1 molybdenum cofactor guanylyltransferase -
  AAV30_RS12335 (AAV30_12335) - 2601678..2602670 (+) 993 WP_038457861.1 hypothetical protein -
  AAV30_RS12340 (AAV30_12340) rok 2602694..2603290 (-) 597 WP_038457860.1 transcriptional regulator Rok Regulator
  AAV30_RS12345 (AAV30_12345) - 2603741..2604199 (-) 459 WP_038457859.1 TlpA disulfide reductase family protein -
  AAV30_RS12350 (AAV30_12350) - 2604488..2605294 (+) 807 WP_032874739.1 mechanosensitive ion channel family protein -
  AAV30_RS12355 (AAV30_12355) - 2605328..2605573 (-) 246 WP_003154596.1 YkuS family protein -
  AAV30_RS12360 (AAV30_12360) - 2605634..2606758 (-) 1125 WP_046702332.1 N-acetyldiaminopimelate deacetylase -
  AAV30_RS12365 (AAV30_12365) dapD 2606829..2607539 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AAV30_RS12370 (AAV30_12370) - 2607621..2608076 (-) 456 WP_007409622.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=144942 AAV30_RS12340 WP_038457860.1 2602694..2603290(-) (rok) [Bacillus velezensis strain YJ11-1-4]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNAGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=144942 AAV30_RS12340 WP_038457860.1 2602694..2603290(-) (rok) [Bacillus velezensis strain YJ11-1-4]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATGCAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment