Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAV30_RS12230 Genome accession   NZ_CP011347
Coordinates   2582507..2582791 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ11-1-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2577507..2587791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS12210 (AAV30_12210) ade 2577613..2579346 (-) 1734 WP_038457873.1 adenine deaminase -
  AAV30_RS12215 (AAV30_12215) ktrC 2579495..2580160 (-) 666 WP_038457872.1 Ktr system potassium transporter KtrC -
  AAV30_RS12220 (AAV30_12220) - 2580201..2581028 (-) 828 WP_038457871.1 gamma-glutamylcyclotransferase -
  AAV30_RS12225 (AAV30_12225) - 2581030..2582334 (-) 1305 WP_032874761.1 ATP-binding protein -
  AAV30_RS12230 (AAV30_12230) abrB 2582507..2582791 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AAV30_RS12240 (AAV30_12240) mreBH 2583063..2584070 (+) 1008 WP_038460721.1 cell shape-determining protein MreBH -
  AAV30_RS20050 - 2584142..2584276 (+) 135 WP_003154559.1 protein YkpC -
  AAV30_RS12245 (AAV30_12245) - 2584377..2585609 (+) 1233 WP_038457870.1 aminopeptidase -
  AAV30_RS12250 (AAV30_12250) - 2585640..2586548 (-) 909 WP_038457869.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=144941 AAV30_RS12230 WP_003154557.1 2582507..2582791(-) (abrB) [Bacillus velezensis strain YJ11-1-4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=144941 AAV30_RS12230 WP_003154557.1 2582507..2582791(-) (abrB) [Bacillus velezensis strain YJ11-1-4]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment