Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAV30_RS11390 Genome accession   NZ_CP011347
Coordinates   2368017..2368916 (-) Length   299 a.a.
NCBI ID   WP_038458005.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ11-1-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2363017..2373916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS11375 (AAV30_11375) xerC 2363401..2364318 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  AAV30_RS11380 (AAV30_11380) trmFO 2364388..2365695 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAV30_RS11385 (AAV30_11385) topA 2365760..2367835 (-) 2076 WP_007409771.1 type I DNA topoisomerase -
  AAV30_RS11390 (AAV30_11390) dprA 2368017..2368916 (-) 900 WP_038458005.1 DNA-processing protein DprA Machinery gene
  AAV30_RS11395 (AAV30_11395) sucD 2368981..2369883 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  AAV30_RS11400 (AAV30_11400) sucC 2369912..2371069 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  AAV30_RS11405 (AAV30_11405) - 2371244..2371525 (-) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  AAV30_RS11410 (AAV30_11410) - 2371522..2373225 (-) 1704 WP_038458003.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32799.95 Da        Isoelectric Point: 8.0700

>NTDB_id=144940 AAV30_RS11390 WP_038458005.1 2368017..2368916(-) (dprA) [Bacillus velezensis strain YJ11-1-4]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIECKNSELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWIIVSGLASGVDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=144940 AAV30_RS11390 WP_038458005.1 2368017..2368916(-) (dprA) [Bacillus velezensis strain YJ11-1-4]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGTGCAAGAATTCCGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGATCATTGTAAGCGGGCTTGCATCCGGTGTAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

69.9

100

0.699
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment