Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAV30_RS10835 Genome accession   NZ_CP011347
Coordinates   2193329..2193763 (-) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain YJ11-1-4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2188329..2198763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS10800 (AAV30_10800) - 2188345..2188698 (+) 354 WP_007410379.1 DMT family transporter -
  AAV30_RS10805 (AAV30_10805) - 2188712..2189164 (-) 453 WP_038463918.1 OsmC family protein -
  AAV30_RS10810 (AAV30_10810) - 2189224..2189931 (-) 708 WP_038463915.1 poly-gamma-glutamate hydrolase family protein -
  AAV30_RS19635 - 2190187..2190418 (-) 232 Protein_2187 hypothetical protein -
  AAV30_RS10820 (AAV30_10820) - 2190597..2191925 (+) 1329 WP_038463909.1 S8 family peptidase -
  AAV30_RS10825 (AAV30_10825) - 2192118..2192480 (+) 363 WP_007410383.1 hypothetical protein -
  AAV30_RS10830 (AAV30_10830) - 2192514..2193269 (-) 756 WP_003154084.1 YoaK family protein -
  AAV30_RS10835 (AAV30_10835) nucA/comI 2193329..2193763 (-) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAV30_RS10840 (AAV30_10840) - 2194052..2195262 (+) 1211 Protein_2192 cytochrome P450 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=144936 AAV30_RS10835 WP_007611576.1 2193329..2193763(-) (nucA/comI) [Bacillus velezensis strain YJ11-1-4]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=144936 AAV30_RS10835 WP_007611576.1 2193329..2193763(-) (nucA/comI) [Bacillus velezensis strain YJ11-1-4]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATAGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment