Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAV30_RS07215 Genome accession   NZ_CP011347
Coordinates   1419632..1420399 (+) Length   255 a.a.
NCBI ID   WP_038459238.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ11-1-4     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1414632..1425399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS07190 (AAV30_07190) - 1414915..1417047 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  AAV30_RS07195 (AAV30_07195) ybeY 1417048..1417521 (+) 474 WP_038459242.1 rRNA maturation RNase YbeY -
  AAV30_RS07200 (AAV30_07200) - 1417502..1417876 (+) 375 WP_015240233.1 diacylglycerol kinase family protein -
  AAV30_RS07205 (AAV30_07205) - 1418000..1418410 (+) 411 WP_003152976.1 cytidine deaminase -
  AAV30_RS07210 (AAV30_07210) era 1418391..1419296 (+) 906 WP_038459240.1 GTPase Era -
  AAV30_RS19480 - 1419452..1419595 (+) 144 WP_007408286.1 YqzL family protein -
  AAV30_RS07215 (AAV30_07215) recO 1419632..1420399 (+) 768 WP_038459238.1 DNA repair protein RecO Machinery gene
  AAV30_RS07220 (AAV30_07220) glyQ 1420701..1421588 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  AAV30_RS07225 (AAV30_07225) glyS 1421581..1423620 (+) 2040 WP_038459236.1 glycine--tRNA ligase subunit beta -
  AAV30_RS07230 (AAV30_07230) ccpN 1423721..1424359 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  AAV30_RS07235 (AAV30_07235) - 1424385..1425197 (+) 813 WP_038459234.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29262.93 Da        Isoelectric Point: 8.7972

>NTDB_id=144924 AAV30_RS07215 WP_038459238.1 1419632..1420399(+) (recO) [Bacillus velezensis strain YJ11-1-4]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEVKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=144924 AAV30_RS07215 WP_038459238.1 1419632..1420399(+) (recO) [Bacillus velezensis strain YJ11-1-4]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGTGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886

Multiple sequence alignment