Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AAV30_RS06410 Genome accession   NZ_CP011347
Coordinates   1265626..1266378 (+) Length   250 a.a.
NCBI ID   WP_046702260.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ11-1-4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1260626..1271378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS06395 (AAV30_06395) - 1260849..1261040 (-) 192 WP_003152639.1 hypothetical protein -
  AAV30_RS06400 (AAV30_06400) - 1261493..1264135 (+) 2643 WP_044801613.1 valine--tRNA ligase -
  AAV30_RS06405 (AAV30_06405) - 1264194..1265486 (+) 1293 WP_046702259.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AAV30_RS06410 (AAV30_06410) comC 1265626..1266378 (+) 753 WP_046702260.1 prepilin peptidase Machinery gene
  AAV30_RS06415 (AAV30_06415) - 1266505..1267506 (+) 1002 WP_032866593.1 SPOR domain-containing protein -
  AAV30_RS06420 (AAV30_06420) - 1267647..1268216 (+) 570 WP_007408164.1 Maf family protein -
  AAV30_RS06425 (AAV30_06425) radC 1268248..1268943 (+) 696 WP_007408165.1 RadC family protein -
  AAV30_RS06430 (AAV30_06430) mreB 1269035..1270048 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  AAV30_RS06435 (AAV30_06435) mreC 1270079..1270942 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27161.90 Da        Isoelectric Point: 9.5938

>NTDB_id=144917 AAV30_RS06410 WP_046702260.1 1265626..1266378(+) (comC) [Bacillus velezensis strain YJ11-1-4]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLGSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=144917 AAV30_RS06410 WP_046702260.1 1265626..1266378(+) (comC) [Bacillus velezensis strain YJ11-1-4]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGTTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGTTGGGTTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment