Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AXF35_RS13190 Genome accession   NZ_CP014255
Coordinates   2913844..2914635 (-) Length   263 a.a.
NCBI ID   WP_027222743.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pascullei strain F-4185     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908844..2919635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF35_RS13175 (AXF35_03765) - 2908890..2910443 (+) 1554 WP_027222739.1 SGNH/GDSL hydrolase family protein -
  AXF35_RS13180 (AXF35_03760) - 2910457..2911614 (-) 1158 WP_027222740.1 metallophosphoesterase -
  AXF35_RS15445 - 2911748..2911921 (+) 174 WP_165481397.1 hypothetical protein -
  AXF35_RS13185 (AXF35_03750) dacB 2911959..2913752 (-) 1794 WP_027222742.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  AXF35_RS13190 (AXF35_03745) spo0J 2913844..2914635 (-) 792 WP_027222743.1 ParB/RepB/Spo0J family partition protein Regulator
  AXF35_RS13195 (AXF35_03740) - 2914750..2915253 (-) 504 WP_027222744.1 hypothetical protein -
  AXF35_RS13200 (AXF35_03735) - 2915428..2916177 (-) 750 WP_027222745.1 CPBP family glutamic-type intramembrane protease -
  AXF35_RS13205 (AXF35_03730) rsmB 2916174..2917457 (-) 1284 WP_027222746.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AXF35_RS13210 (AXF35_03725) fmt 2917454..2918398 (-) 945 WP_027222747.1 methionyl-tRNA formyltransferase -
  AXF35_RS13215 (AXF35_03720) def 2918395..2918907 (-) 513 WP_027222748.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30044.25 Da        Isoelectric Point: 6.0539

>NTDB_id=144903 AXF35_RS13190 WP_027222743.1 2913844..2914635(-) (spo0J) [Legionella pneumophila subsp. pascullei strain F-4185]
MQSRFTYLPITSLQAGQYQPRQDFNATELQELAQSISSQGLIEPLVVRTIAKERYEIIAGERRWRAAKLAGLTEIPCLIG
DYSDKQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPDQQEMFANQVIGEEWSVRHLEQEIKSYKNKDMSSPKNPRKDRDIERLQTILAEQVGAPVQIINEGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=144903 AXF35_RS13190 WP_027222743.1 2913844..2914635(-) (spo0J) [Legionella pneumophila subsp. pascullei strain F-4185]
ATGCAATCCCGATTTACTTATTTACCTATTACGAGTCTGCAGGCAGGTCAGTATCAACCCAGACAAGATTTTAATGCAAC
TGAATTACAGGAATTAGCTCAGTCAATTTCTTCTCAAGGGTTAATTGAACCCTTGGTTGTAAGAACCATTGCAAAAGAGC
GATATGAGATTATTGCAGGGGAAAGAAGATGGCGAGCGGCCAAATTGGCGGGATTAACTGAAATCCCCTGTCTAATTGGT
GATTATAGTGATAAGCAGGCGTGTGCTCTGACTTTAATCGAAAATATTCAGCGTCAGGATTTGAATTTAATCGAGGAAGC
AACTGGTTATAAGCGTTTAATTGAAGAATTTCATTATCATCAGGACGAAATCGCGGCCTTGGTCGGTAAGTCTCGTAGCC
ATGTAGCAAATATTCTTCGCCTCCTTACCTTAACCGATAAGGTTAAACAGTTAGTTCGAGACAAAGTGTTATCTTTTGGA
CATGCTCGCGTATTGGTTGGCTTAAATCCTGATCAGCAAGAAATGTTTGCTAACCAGGTGATTGGAGAGGAATGGTCTGT
CAGGCACTTGGAGCAAGAAATTAAATCTTACAAAAATAAAGATATGTCCAGCCCCAAAAATCCCAGGAAAGACAGAGATA
TTGAACGACTACAGACTATTCTGGCTGAGCAAGTGGGTGCTCCTGTACAAATTATAAACGAAGGTGAGGATGGAGGCTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGTTTGGGCTTGCGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.692

98.859

0.373