Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AAV29_RS06960 Genome accession   NZ_CP011346
Coordinates   1363518..1364114 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ-D34     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358518..1369114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV29_RS06930 (AAV29_06930) - 1358733..1359188 (+) 456 WP_003154599.1 flavodoxin -
  AAV29_RS06935 (AAV29_06935) dapD 1359270..1359980 (+) 711 WP_046559550.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AAV29_RS06940 (AAV29_06940) - 1360050..1361174 (+) 1125 WP_046559551.1 N-acetyldiaminopimelate deacetylase -
  AAV29_RS06945 (AAV29_06945) - 1361235..1361480 (+) 246 WP_003154596.1 YkuS family protein -
  AAV29_RS06950 (AAV29_06950) - 1361514..1362320 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  AAV29_RS06955 (AAV29_06955) - 1362608..1363066 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  AAV29_RS06960 (AAV29_06960) rok 1363518..1364114 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  AAV29_RS06965 (AAV29_06965) - 1364135..1365127 (-) 993 WP_046559552.1 hypothetical protein -
  AAV29_RS06970 (AAV29_06970) - 1365273..1365875 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  AAV29_RS06975 (AAV29_06975) - 1365927..1366946 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  AAV29_RS06980 (AAV29_06980) glp 1366964..1368256 (+) 1293 WP_046559553.1 gephyrin-like molybdotransferase Glp -
  AAV29_RS06985 (AAV29_06985) mobB 1368217..1368738 (+) 522 WP_046559554.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=144850 AAV29_RS06960 WP_003154591.1 1363518..1364114(+) (rok) [Bacillus velezensis strain JJ-D34]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=144850 AAV29_RS06960 WP_003154591.1 1363518..1364114(+) (rok) [Bacillus velezensis strain JJ-D34]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment