Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAV29_RS06860 Genome accession   NZ_CP011346
Coordinates   1347656..1348120 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain JJ-D34     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342656..1353120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV29_RS06845 (AAV29_06845) - 1343136..1344956 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  AAV29_RS06850 (AAV29_06850) - 1344932..1346151 (-) 1220 Protein_1323 aminotransferase A -
  AAV29_RS21265 - 1346352..1346513 (-) 162 WP_007409608.1 hypothetical protein -
  AAV29_RS06855 (AAV29_06855) cheV 1346702..1347613 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  AAV29_RS06860 (AAV29_06860) kre 1347656..1348120 (-) 465 WP_003154622.1 YkyB family protein Regulator
  AAV29_RS06865 (AAV29_06865) - 1348243..1349535 (-) 1293 WP_046559548.1 MFS transporter -
  AAV29_RS06870 (AAV29_06870) - 1349611..1350105 (-) 495 WP_088005492.1 L,D-transpeptidase family protein -
  AAV29_RS06875 (AAV29_06875) - 1350180..1351043 (-) 864 WP_015388306.1 metallophosphoesterase -
  AAV29_RS06880 (AAV29_06880) fadH 1351187..1351951 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  AAV29_RS21515 (AAV29_06885) - 1352062..1352610 (+) 549 Protein_1331 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=144849 AAV29_RS06860 WP_003154622.1 1347656..1348120(-) (kre) [Bacillus velezensis strain JJ-D34]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=144849 AAV29_RS06860 WP_003154622.1 1347656..1348120(-) (kre) [Bacillus velezensis strain JJ-D34]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment