Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AXE82_RS09600 Genome accession   NZ_CP014234
Coordinates   2176984..2177655 (+) Length   223 a.a.
NCBI ID   WP_062334123.1    Uniprot ID   A0A378QCJ7
Organism   Moraxella osloensis strain CCUG 350     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2171984..2182655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE82_RS09585 (AXE82_09590) - 2172322..2172840 (+) 519 WP_062334113.1 DUF6586 family protein -
  AXE82_RS09590 (AXE82_09595) - 2172971..2175700 (-) 2730 WP_062334116.1 penicillin-binding protein 1A -
  AXE82_RS09595 (AXE82_09600) pilM 2175932..2176984 (+) 1053 WP_062334119.1 pilus assembly protein PilM Machinery gene
  AXE82_RS09600 (AXE82_09605) pilN 2176984..2177655 (+) 672 WP_062334123.1 PilN domain-containing protein Machinery gene
  AXE82_RS09605 (AXE82_09610) comO/pilO 2177658..2178419 (+) 762 WP_062334126.1 type 4a pilus biogenesis protein PilO Machinery gene
  AXE82_RS09610 (AXE82_09615) comL/pilP 2178406..2178939 (+) 534 WP_062334128.1 pilus assembly protein PilP Machinery gene
  AXE82_RS09615 (AXE82_09620) pilQ 2178957..2181329 (+) 2373 WP_062334131.1 type IV pilus secretin family protein Machinery gene
  AXE82_RS09620 (AXE82_09625) - 2181437..2181973 (+) 537 WP_062334134.1 shikimate kinase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24756.31 Da        Isoelectric Point: 9.2936

>NTDB_id=144836 AXE82_RS09600 WP_062334123.1 2176984..2177655(+) (pilN) [Moraxella osloensis strain CCUG 350]
MAKINLLPWRQELREQRNREFMTLVVAVLLLSLLGAFAAWSYYKNTLENQQLANERIKQENANLDKALKEIQTLEQQRDD
IIARMKVIQDLQGRRPVPVRIWDDIARIIPAQMYLTSMKREADTITFTGQADNPNVISTFMRSLDGTQWLEKSAVVSIQQ
PNAVAYQAPTPTPAAGNISASSTSATLPEANYVTFVVTTMVKQTDIASATAASGVAASASKEK

Nucleotide


Download         Length: 672 bp        

>NTDB_id=144836 AXE82_RS09600 WP_062334123.1 2176984..2177655(+) (pilN) [Moraxella osloensis strain CCUG 350]
ATGGCAAAGATTAACTTACTTCCTTGGCGTCAAGAACTTCGTGAACAAAGAAACCGTGAGTTTATGACTTTAGTGGTTGC
GGTATTATTATTATCACTACTTGGTGCCTTTGCGGCATGGAGTTACTATAAAAACACCCTAGAAAACCAGCAGCTTGCTA
ATGAACGCATCAAACAAGAAAACGCTAATTTAGACAAGGCGTTAAAAGAAATCCAAACCCTTGAGCAGCAGCGTGATGAT
ATCATCGCGCGTATGAAAGTGATTCAAGACTTGCAAGGTCGTCGCCCTGTCCCTGTTCGTATTTGGGACGATATTGCCAG
AATTATCCCCGCACAAATGTATTTGACCAGTATGAAGCGAGAAGCTGATACCATCACCTTTACCGGTCAAGCCGACAACC
CGAATGTGATTTCAACATTTATGCGCAGTCTTGATGGGACGCAGTGGTTAGAAAAATCGGCGGTGGTCAGTATACAGCAG
CCCAATGCAGTGGCTTATCAAGCCCCCACACCCACGCCTGCTGCCGGTAACATCAGCGCTAGCAGTACCAGCGCAACATT
ACCAGAAGCCAATTACGTGACTTTTGTGGTAACAACCATGGTTAAGCAAACCGACATCGCCAGTGCCACCGCTGCAAGTG
GCGTTGCGGCAAGTGCGAGTAAGGAGAAATAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378QCJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

37.885

100

0.386