Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AW869_RS15225 Genome accession   NZ_CP014225
Coordinates   3102997..3103473 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3097997..3108473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW869_RS15200 (AW869_15200) proB 3099129..3100232 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  AW869_RS15205 (AW869_15205) proA 3100244..3101497 (+) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  AW869_RS15215 (AW869_15215) ykfI 3102069..3102410 (-) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  AW869_RS15220 (AW869_15220) yafW 3102431..3102748 (-) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  AW869_RS24235 ykfH 3102767..3102988 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  AW869_RS15225 (AW869_15225) radC 3102997..3103473 (-) 477 WP_000811693.1 JAB domain-containing protein Machinery gene
  AW869_RS15230 (AW869_15230) yafX 3103489..3103947 (-) 459 WP_000211838.1 antirestriction protein -
  AW869_RS15235 (AW869_15235) ykfF 3104045..3104284 (-) 240 WP_000194654.1 DUF905 domain-containing protein -
  AW869_RS15240 (AW869_15240) ykfB 3104361..3104828 (-) 468 WP_001547765.1 protein YkfB -
  AW869_RS25695 (AW869_15245) yafY 3104851..3105294 (-) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  AW869_RS25700 (AW869_15250) ypjK 3105294..3105533 (-) 240 WP_032243554.1 protein YpjK -
  AW869_RS25705 - 3105508..3105708 (-) 201 Protein_2906 DeoR family transcriptional regulator -
  AW869_RS15255 (AW869_15255) yafZ 3105925..3106746 (-) 822 WP_000197389.1 DUF932 domain-containing protein -
  AW869_RS15260 (AW869_15260) ykfA 3106838..3107701 (-) 864 WP_001065553.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=144773 AW869_RS15225 WP_000811693.1 3102997..3103473(-) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=144773 AW869_RS15225 WP_000811693.1 3102997..3103473(-) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38