Detailed information NTG0144711

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: VL20_RS16375
• Genome accession: NZ_CP011339
• Coordinates: 3396568..3398208 (-)
• Length: 546 a.a.
• NCBI ID: WP_052277116.1
• Uniprot ID: A0A0K1S4E9
• Organism: Microcystis panniformis FACHB-1757
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3394871..3395992	3396568..3398208	flank	576

Gene organization within MGE regions

Location: 3394871..3398208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VL20_RS16370 (VL20_3979)	-	3394901..3395992 (+)	1092	Protein_3424	ISAs1 family transposase	-
VL20_RS16375 (VL20_3982)	comA	3396568..3398208 (-)	1641	WP_052277116.1	DUF655 domain-containing protein	Machinery gene

Sequence

Protein

• Length: 546 a.a.
• Molecular weight: 61478.42 Da
• Isoelectric Point: 9.8692

>NTDB_id=144711 VL20_RS16375 WP_052277116.1 3396568..3398208(-) (comA) [Microcystis panniformis FACHB-1757]
MWIKMAIDKLRLKKIRTMKQLGFLLGTVFLLWGCHSLNVIQNRPQPLPQDPYIQVYFNYNQAQGSNYTDPYRQINRPGDN
LEQVIIDNINSAKSSINLAVQELRLPAIAQALVARQQQGIKVRVILENIYNKPIHSLAKNREKSSDREQERYQNIFDLVD
INRDGKLSPEEIAQRDAITILKKAGIPLIDDSADRSKGSGLMHHKFMVIDNYTTLISSANYTLSDIHGDFSNPKTVGNAN
HLLVITNPPLARVFQREFNLMWGREDSPKFGLDKPQRKPQTITIGNSSLTVKFSPDSTAYPWAITSNGLIGETLNKAKKS
VNLALFVLTEQPLANILAQRHQKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVPALAPGD
KLHHKFGLIDDKIVITGSHNWSKAANHQNDEALVIIDNPTVAAHFDREFQYLYRTAKLGLPETIKNRIEQDRKNCPQSVT
IKSDRLINLNTATKEELDTLPGISGKLAEKIIAARQEKPFTSLEDLDRVSGIGKGKINKLKGKVSW

Nucleotide

• Length: 1641 bp

>NTDB_id=144711 VL20_RS16375 WP_052277116.1 3396568..3398208(-) (comA) [Microcystis panniformis FACHB-1757]
ATGTGGATAAAAATGGCAATAGATAAATTGAGATTAAAAAAAATTCGGACTATGAAACAGTTAGGATTTTTGTTAGGAAC
AGTTTTTCTTTTGTGGGGTTGTCATTCTCTCAATGTTATCCAAAATCGTCCCCAACCCTTGCCCCAAGATCCATATATTC
AAGTCTATTTTAATTATAATCAGGCCCAGGGTTCAAATTATACCGATCCCTATCGCCAAATTAATCGCCCAGGGGATAAT
TTAGAACAGGTTATTATTGATAATATTAACTCGGCAAAAAGTTCGATCAATCTAGCGGTGCAAGAGTTACGTTTACCCGC
CATCGCTCAAGCTTTAGTTGCTCGTCAGCAGCAGGGAATTAAAGTTAGGGTTATCCTCGAAAATATTTACAATAAACCTA
TTCATAGTTTAGCTAAAAACCGAGAAAAATCAAGCGATCGAGAACAGGAACGTTATCAAAATATTTTTGATTTAGTTGAT
ATAAATCGAGATGGTAAATTAAGTCCAGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGTATTCC
CCTAATTGATGATAGTGCAGATCGCTCAAAAGGTAGTGGTTTAATGCACCATAAATTCATGGTTATTGATAATTACACTA
CTTTAATCAGTTCAGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATCCCAAAACTGTCGGGAATGCCAAT
CACTTATTAGTAATTACTAATCCCCCACTAGCTAGAGTTTTTCAAAGAGAATTTAATCTGATGTGGGGAAGGGAAGATAG
TCCTAAATTTGGCTTAGATAAACCCCAGAGAAAACCACAAACAATTACTATCGGTAATAGTAGTCTGACGGTCAAATTTT
CCCCCGATTCTACCGCTTATCCCTGGGCAATTACTAGCAATGGTCTGATCGGTGAAACTTTAAATAAAGCTAAAAAATCC
GTGAATTTAGCCCTGTTTGTCCTGACGGAACAGCCTTTGGCTAATATTCTCGCCCAACGACATCAAAAAGGGATAGAAAT
TAAAGCTTTAATTGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATA
AATGTCGTTATGAACCAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTCCCGCTCTAGCCCCGGGAGAT
AAATTACACCATAAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAAAGCTGCTAACCA
TCAAAATGATGAAGCTTTAGTTATTATCGATAATCCCACCGTTGCTGCTCATTTCGATCGAGAATTTCAATATCTTTACC
GTACCGCTAAATTAGGACTGCCGGAAACTATTAAAAATCGGATCGAACAGGATAGAAAAAACTGCCCCCAATCTGTAACA
ATTAAAAGCGATCGCTTAATTAATTTAAACACTGCCACAAAAGAAGAATTAGATACTTTACCCGGTATCAGTGGCAAATT
AGCCGAAAAAATTATCGCAGCCCGGCAAGAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTA
AGGGAAAAATTAACAAGCTCAAAGGCAAAGTCAGCTGGTGA

Domains

Predicted by InterproScan.

• PLD-like domain (PLDc_2) (312-452)

• PLD-like domain (PLDc_2) (85-262)

• Helix-hairpin-helix motif (HHH_3) (485-544)

3D structure

• AlphaFold DB: A0A0K1S4E9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Synechocystis sp. PCC 6803	52.427	94.322	0.495