Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   VL20_RS15430 Genome accession   NZ_CP011339
Coordinates   3191643..3194756 (-) Length   1037 a.a.
NCBI ID   WP_052277008.1    Uniprot ID   -
Organism   Microcystis panniformis FACHB-1757     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3186643..3199756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VL20_RS15410 (VL20_3738) - 3186910..3187929 (-) 1020 WP_052278483.1 hypothetical protein -
  VL20_RS15415 (VL20_3739) uvrB 3187934..3189937 (-) 2004 WP_052277006.1 excinuclease ABC subunit UvrB -
  VL20_RS15420 (VL20_3741) - 3190129..3190620 (+) 492 WP_002760830.1 hypothetical protein -
  VL20_RS15425 (VL20_3742) - 3190701..3191450 (+) 750 WP_052277007.1 class I SAM-dependent methyltransferase -
  VL20_RS15430 (VL20_3743) pilL-C 3191643..3194756 (-) 3114 WP_052277008.1 hybrid sensor histidine kinase/response regulator Machinery gene
  VL20_RS15435 (VL20_3744) - 3194863..3195525 (+) 663 WP_002788937.1 class I SAM-dependent methyltransferase -
  VL20_RS15445 (VL20_3746) - 3195955..3196896 (+) 942 WP_002788939.1 homogentisate phytyltransferase -
  VL20_RS15450 (VL20_3747) - 3196893..3199139 (+) 2247 WP_052277009.1 hypothetical protein -
  VL20_RS15455 (VL20_3748) - 3199303..3199671 (+) 369 WP_052277010.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 1037 a.a.        Molecular weight: 113734.15 Da        Isoelectric Point: 4.4132

>NTDB_id=144709 VL20_RS15430 WP_052277008.1 3191643..3194756(-) (pilL-C) [Microcystis panniformis FACHB-1757]
MMKPDSDHLFNEDSEQLLESLEDKDADGNEALDELSFLLEQSPSPAARSGDSLSQTPSSLTSERELEELFGDSINWKDAP
TNNLYSTREPAAKAELEDGDDLASLLLEDAAVPDSEAIIAISHPNFYDSLEDLEAFLEKPTPPAQPPLPDIFESLEVLLW
ESPAVDPVAAVEPLTGLESLEIAPESLLEDEFKDLEKLLEETNQVMAANPAASVSSPVGSKNLRPLVSKAFEQTMRVPIK
QLDNLSNLIGELVVKRNRLEEEQDRLRLFLDNLLTCVQHLGDVGIRMQDLYERSLLEGALLASRNYGGAIGYGRVQGENQ
GDSSMDGQLDALEIDRFTDFHLLSQEMIELIVRVRESASDLQFVVDETDQVTHSLRQATTQLQEGMTKSRMVPFSQTADR
LPRAIRDISLKLDKQAKLKVEGGDVLIDKMILEHLNSPMTHLVNNAITHGIESPQERLAKGKPALGTISVGAFLQGNQTV
ITVSDDGAGIDADQVKGKAIKKGLIGAQEAEHLSPQEVYELLFHPGFSTKDQADDFSGRGVGLDVVRTSLIDVRGTVTID
SVLGKGSTFTLRLPLTLTICKALCCVSNHARIGFSMDGVEDMKDFRASEMQIDREGRRCVFWQNTLLPFQPLSELLSYNR
QLSRGSFYTGKQEEDSFSIVILRGGNNLLAVQVDQVIGELEIVIKQIEGPIPKTAGIAGATVLGDGTVMPIGDVLELIDI
ARGRLRTDNGGLWRQPVPPVAVETSQKSEAMVLIVDDSITVLELLSLSFSKAGYRVEQARDGQEAWEKLRSGLPCDIVFC
DIEMPRMNGLELLYNLRKDPRLASIPVALLTSRGAERHRQVAATLGASGYFTKPYTERDLLSAAERMIAGEVLLANSIKA
TSNRSLSTDTTMIDSNPANFFAQSTPRVLIVDDSVTAREMLAISLVKAGYRIEKARDGLEAWEKLRAGLACDLILCDLEM
PRLNGLELLSRLQEDEQLQGIPVAMITSRGSQKMQHLAAAKGAKGYFVKPYIEDVLLSAAQRLIAGEVLIQKESPAD

Nucleotide


Download         Length: 3114 bp        

>NTDB_id=144709 VL20_RS15430 WP_052277008.1 3191643..3194756(-) (pilL-C) [Microcystis panniformis FACHB-1757]
ATGATGAAACCCGACTCGGATCATCTCTTTAACGAAGATAGCGAACAGTTGTTAGAGAGTTTAGAAGACAAAGACGCCGA
CGGTAATGAGGCTCTAGACGAACTCAGCTTTTTATTGGAGCAGAGTCCCTCTCCAGCAGCCAGATCTGGGGACTCTCTTA
GCCAAACCCCGTCTTCCTTGACCTCGGAAAGGGAATTAGAGGAACTGTTTGGCGATAGCATCAATTGGAAAGATGCCCCG
ACTAATAATCTTTATTCTACCCGTGAGCCAGCTGCCAAGGCGGAACTGGAAGATGGGGATGATCTCGCATCTCTGCTGCT
AGAAGATGCAGCAGTTCCAGACTCAGAAGCAATTATAGCCATCAGCCACCCTAATTTTTACGACAGCCTCGAAGACTTAG
AAGCTTTTCTGGAAAAACCCACGCCACCGGCGCAACCGCCACTACCAGACATCTTTGAATCCCTAGAGGTCCTTCTCTGG
GAATCCCCAGCAGTGGACCCGGTGGCGGCGGTGGAACCTCTGACAGGGTTAGAATCACTGGAAATTGCCCCAGAAAGCCT
CCTAGAGGATGAATTCAAGGATTTAGAAAAACTCCTCGAAGAAACCAATCAGGTGATGGCAGCAAATCCGGCGGCCAGTG
TCAGTTCACCAGTCGGGTCAAAAAACCTGCGTCCCCTTGTCAGTAAAGCTTTTGAACAGACGATGCGGGTGCCGATCAAA
CAATTGGATAACCTCAGCAATCTGATCGGGGAACTGGTGGTTAAACGCAATCGCCTGGAAGAGGAACAGGATCGCCTGCG
TCTCTTTTTAGATAATTTGCTAACCTGCGTCCAACATCTGGGGGATGTGGGCATTCGGATGCAGGATCTCTATGAAAGAA
GCCTCCTAGAAGGGGCTTTACTGGCTAGTCGCAATTACGGTGGTGCCATCGGTTACGGTAGAGTTCAGGGAGAAAATCAG
GGGGATTCGTCCATGGACGGTCAACTAGATGCCCTAGAGATCGACCGTTTTACCGATTTCCATTTATTATCCCAAGAGAT
GATCGAATTGATCGTACGAGTGCGAGAATCGGCCTCTGATCTTCAATTTGTCGTCGATGAAACCGATCAGGTGACGCACA
GTCTGCGACAGGCCACCACTCAACTACAGGAAGGGATGACCAAATCGCGCATGGTTCCCTTTAGTCAAACTGCCGATCGC
CTACCCCGGGCAATTCGGGATATTTCCCTGAAACTCGATAAACAAGCCAAATTAAAAGTGGAAGGGGGTGATGTTCTCAT
CGATAAGATGATCCTCGAACATCTCAATAGTCCCATGACCCATTTGGTCAACAATGCGATCACCCACGGCATTGAATCAC
CCCAAGAACGCCTGGCCAAAGGGAAACCCGCCCTCGGTACCATCTCTGTGGGGGCATTCCTACAGGGTAATCAAACCGTG
ATCACCGTTAGTGATGATGGGGCCGGTATTGATGCTGATCAGGTGAAAGGCAAGGCGATCAAAAAAGGCCTGATCGGCGC
TCAGGAAGCTGAACACCTCAGTCCCCAAGAAGTCTATGAACTCCTCTTTCACCCCGGTTTTAGTACCAAAGATCAGGCCG
ATGATTTTTCCGGTCGTGGGGTGGGTTTAGATGTGGTGCGGACCAGTTTAATCGATGTGCGCGGGACCGTTACTATTGAC
TCGGTACTGGGCAAAGGAAGCACTTTTACGCTCCGTTTACCCCTAACCCTGACTATCTGTAAGGCCCTCTGTTGTGTTAG
TAATCATGCGCGCATCGGTTTCTCTATGGACGGAGTGGAAGATATGAAGGATTTCCGGGCCAGCGAGATGCAAATCGATC
GGGAGGGACGGCGCTGCGTTTTCTGGCAAAATACTTTACTACCCTTCCAACCCTTGAGCGAATTGCTTTCCTACAATCGG
CAACTAAGTCGCGGTAGTTTTTATACTGGCAAACAGGAGGAAGACTCTTTTTCGATCGTGATCCTGCGCGGTGGTAATAA
TCTCCTCGCAGTACAGGTGGATCAAGTGATCGGTGAACTGGAAATCGTCATCAAACAGATCGAAGGACCGATTCCGAAAA
CGGCTGGGATTGCTGGGGCGACGGTTTTGGGGGATGGTACGGTGATGCCGATCGGCGATGTGTTAGAGTTAATTGACATC
GCCAGGGGTCGTCTGCGTACCGATAACGGTGGTCTTTGGCGCCAACCTGTCCCTCCCGTAGCGGTGGAAACTAGCCAAAA
ATCGGAGGCTATGGTTCTGATTGTCGATGATTCGATTACTGTCCTGGAATTGCTCTCTTTAAGCTTTAGTAAAGCCGGTT
ATCGTGTGGAACAGGCCCGGGATGGTCAAGAAGCTTGGGAAAAATTACGCAGCGGTTTGCCCTGTGATATCGTTTTCTGC
GATATCGAGATGCCCCGCATGAATGGCCTAGAATTACTCTATAATTTGCGAAAAGACCCCCGATTAGCGTCGATTCCCGT
GGCTTTATTGACTTCCCGAGGAGCGGAACGTCATCGTCAGGTGGCGGCGACATTAGGAGCTAGTGGTTATTTTACCAAGC
CCTACACGGAAAGAGATTTACTCTCGGCGGCTGAAAGAATGATTGCGGGGGAAGTGTTACTAGCTAATAGTATTAAAGCG
ACTTCTAATCGGTCTTTATCCACGGATACAACGATGATTGACAGTAATCCCGCTAATTTCTTTGCACAATCGACTCCTCG
GGTCTTGATTGTCGATGATTCGGTAACGGCGCGGGAAATGTTAGCGATTTCTTTGGTTAAAGCTGGTTATCGCATTGAAA
AGGCCCGAGACGGTTTAGAAGCATGGGAAAAATTACGGGCTGGATTAGCTTGTGATCTGATTCTCTGCGATCTGGAAATG
CCTCGCCTGAATGGGTTAGAATTGCTCTCTCGTCTGCAAGAGGATGAACAACTTCAAGGGATACCAGTAGCGATGATTAC
CTCGCGAGGGTCGCAAAAAATGCAGCATCTCGCCGCCGCTAAAGGGGCAAAAGGTTATTTTGTCAAGCCCTATATTGAGG
ATGTTTTACTGTCGGCAGCCCAACGTTTAATCGCTGGTGAGGTGTTAATCCAAAAAGAAAGTCCCGCGGATTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(439-576)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(233-387)

CheW-like domain (CheW)

(583-719)

Response regulator receiver domain (Response_reg)

(752-864)

Response regulator receiver domain (Response_reg)

(908-1019)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

66.241

83.124

0.551

Multiple sequence alignment