Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AAF13_RS13735 Genome accession   NZ_CP011331
Coordinates   2669326..2669955 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O104:H4 str. C227-11 isolate 368 shch     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2664326..2674955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF13_RS13720 (AAF13_13730) helD 2664568..2666622 (-) 2055 WP_000420536.1 DNA helicase IV -
  AAF13_RS13725 (AAF13_13735) yccF 2666745..2667191 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AAF13_RS13730 (AAF13_13740) yccS 2667201..2669363 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AAF13_RS13735 (AAF13_13745) sxy/tfoX 2669326..2669955 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AAF13_RS13740 (AAF13_13750) sulA 2670174..2670683 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AAF13_RS13750 (AAF13_13760) ompA 2671040..2672080 (+) 1041 WP_000750416.1 porin OmpA -
  AAF13_RS13755 (AAF13_13765) matP 2672156..2672608 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AAF13_RS13760 (AAF13_13770) ycbZ 2672794..2674554 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=144687 AAF13_RS13735 WP_000839153.1 2669326..2669955(-) (sxy/tfoX) [Escherichia coli O104:H4 str. C227-11 isolate 368 shch]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=144687 AAF13_RS13735 WP_000839153.1 2669326..2669955(-) (sxy/tfoX) [Escherichia coli O104:H4 str. C227-11 isolate 368 shch]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment