Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | YH61_RS05585 | Genome accession | NZ_CP011330 |
| Coordinates | 1201445..1202020 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203557.1 | Uniprot ID | Q9ZJE6 |
| Organism | Helicobacter pylori J99 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1196445..1207020
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YH61_RS05560 (YH61_05555) | uvrD | 1197134..1199179 (+) | 2046 | WP_000505267.1 | DNA helicase UvrD | - |
| YH61_RS05565 (YH61_05560) | flgA | 1199176..1199832 (+) | 657 | WP_000699043.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| YH61_RS05570 (YH61_05565) | - | 1199842..1200405 (+) | 564 | WP_000780089.1 | UbiX family flavin prenyltransferase | - |
| YH61_RS05575 (YH61_05570) | coaD | 1200405..1200878 (+) | 474 | WP_001169238.1 | pantetheine-phosphate adenylyltransferase | - |
| YH61_RS05580 (YH61_05575) | tmk | 1200882..1201457 (+) | 576 | WP_000289745.1 | dTMP kinase | - |
| YH61_RS05585 (YH61_05580) | comFC | 1201445..1202020 (+) | 576 | WP_001203557.1 | ComF family protein | Machinery gene |
| YH61_RS05590 (YH61_05585) | - | 1202052..1204088 (+) | 2037 | WP_001045380.1 | N-6 DNA methylase | - |
| YH61_RS05595 (YH61_05590) | - | 1204085..1205305 (+) | 1221 | WP_000580077.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21307.81 Da Isoelectric Point: 8.8914
>NTDB_id=144672 YH61_RS05585 WP_001203557.1 1201445..1202020(+) (comFC) [Helicobacter pylori J99]
MRCLTCLKLSFKPLCPNCLNDLPLSLKLRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRNFTFRGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKLRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRNFTFRGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=144672 YH61_RS05585 WP_001203557.1 1201445..1202020(+) (comFC) [Helicobacter pylori J99]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCCTTTAAGCCCCTTTGCCCAAATTGCCTGAACGATTTGCCCTTAAGCTTAAA
GTTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTTATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACTTTCAGGGGCGATGAAAGTTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCCTTTAAGCCCCTTTGCCCAAATTGCCTGAACGATTTGCCCTTAAGCTTAAA
GTTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTTATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACTTTCAGGGGCGATGAAAGTTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.382 |
100 |
0.974 |