Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AXA63_RS12555 Genome accession   NZ_CP014215
Coordinates   2565992..2566933 (-) Length   313 a.a.
NCBI ID   WP_001210787.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YU-R612     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2560992..2571933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA63_RS12540 (AXA63_12540) bauB 2563303..2564271 (-) 969 WP_001104139.1 siderophore-binding periplasmic lipoprotein BauB -
  AXA63_RS12545 (AXA63_12545) bauE 2564278..2565048 (-) 771 WP_000582115.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  AXA63_RS12550 (AXA63_12550) bauC 2565045..2565992 (-) 948 WP_001223274.1 ferric acinetobactin ABC transporter permease subunit BauC -
  AXA63_RS12555 (AXA63_12555) ceuB 2565992..2566933 (-) 942 WP_001210787.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  AXA63_RS21355 - 2566933..2567064 (-) 132 WP_001218004.1 hypothetical protein -
  AXA63_RS12560 (AXA63_12560) basB 2567565..2569595 (+) 2031 WP_000939834.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  AXA63_RS12565 (AXA63_12565) basA 2569666..2571513 (-) 1848 WP_000910253.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34037.17 Da        Isoelectric Point: 8.6941

>NTDB_id=144672 AXA63_RS12555 WP_001210787.1 2565992..2566933(-) (ceuB) [Acinetobacter baumannii strain YU-R612]
MRFGLFCIFIILCICSLLLGAEQIQWSTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNMVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=144672 AXA63_RS12555 WP_001210787.1 2565992..2566933(-) (ceuB) [Acinetobacter baumannii strain YU-R612]
ATGCGATTTGGCTTATTCTGTATTTTTATCATTTTATGTATTTGTTCGTTATTGCTGGGGGCTGAACAAATACAGTGGTC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATTCCTCGTTTAATTACTATTGTGCTTA
CCGGTATCGGGTTGGCGGTATGTGGCGTCATCTTGCAGCACATTGTGCGTAACAAGTTTGTTGAACCGGAAACTTCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCGTTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATCCGCCGGATCCGTTTTAGAAATATGGTTTTAG
TACCGGTAATTGGTTTGATGTACGGCAGTGTACTGAGCGCTTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGCCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTTGCACACCGCTTTACCGTGATTGGTATGGGTGAAGAGATGGCTTCTAGCCTAGGACTTA
GTTATGCAGCTATAGCCGCTATTGGTTTAATACTGGTTGCCATTACGGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTGCCCAATTTGGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCCATTGTGGC
TTTAGGTGGGGCGTCTCTATTACTGATTTGCGACATTCTTGGTCGCTCGATTATTTATCCATTTGAAGTGCCGATCGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419

Multiple sequence alignment