Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SAH002_RS07025 Genome accession   NZ_CP011329
Coordinates   1397190..1399007 (-) Length   605 a.a.
NCBI ID   WP_000481813.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain H002     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392190..1404007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAH002_RS07005 (SAH002_07020) - 1392795..1394024 (-) 1230 WP_000489529.1 HAMP domain-containing sensor histidine kinase -
  SAH002_RS07010 (SAH002_07025) - 1394024..1394710 (-) 687 WP_050882000.1 response regulator transcription factor -
  SAH002_RS07015 (SAH002_07030) - 1394712..1395338 (-) 627 WP_000449644.1 GTP pyrophosphokinase family protein -
  SAH002_RS07020 (SAH002_07035) rcrQ 1395446..1397200 (-) 1755 WP_000851087.1 ABC transporter ATP-binding protein Regulator
  SAH002_RS07025 (SAH002_07040) rcrP 1397190..1399007 (-) 1818 WP_000481813.1 ABC transporter ATP-binding protein Regulator
  SAH002_RS07030 (SAH002_07045) - 1399054..1399494 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator -
  SAH002_RS07035 (SAH002_07050) - 1399763..1401835 (+) 2073 WP_000726930.1 bifunctional metallophosphatase/5'-nucleotidase -
  SAH002_RS07040 (SAH002_07055) - 1401872..1402282 (-) 411 WP_000594935.1 peptide deformylase -
  SAH002_RS07045 (SAH002_07060) gdhA 1402352..1403701 (-) 1350 WP_000200435.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67398.17 Da        Isoelectric Point: 7.2360

>NTDB_id=144643 SAH002_RS07025 WP_000481813.1 1397190..1399007(-) (rcrP) [Streptococcus agalactiae strain H002]
MFNIFKRLNGKEWLMIVASTILVCLAVWMDLKTPEYMSDITRMLQTKGTKLEALWDPGLKMLAFSFGSFLVAVMVGFLGA
RTAASFTSRLRSDIFNHVMDYSDAEIKRFSIPSLLTRTTNDLTQLQILIVMGMQVVTRGPIMAIWALTKIWGKSDQWTGA
AGVAVIIVMILLSVLLLLAFPRQRQIQGFTDALNATTREALSGVRVIRAYNAEKYQTDKFKRENDDLTKLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGSYLINDISVPKVTGTSVSVLAAKSAITDRVDLFSNMVVFSSYAMQVVMGFMMMVAIFIIM
PRALVSARRINEVLTLAPTVTFKENSHIQSAPKGQIEFQDVSFHYSKDSEAVIEHVSFKADTGQTVAFIGSTGSGKSTLV
NLVPRFYDATEGSIKLDGIDIKEYSHNDLNNKIGYIPQKAVLFSGTVRSNMIFGESGREELSDEQIWQALELAQAKEFIE
AKEKGLDTEVAQGGSNFSGGQKQRLAIARALARHPEILIFDDSFSALDYKTDHILRHVLKEKTAAMTKLIVAQRISTIMD
ADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEELENEN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=144643 SAH002_RS07025 WP_000481813.1 1397190..1399007(-) (rcrP) [Streptococcus agalactiae strain H002]
ATGTTTAATATTTTCAAGCGACTCAATGGTAAAGAATGGTTGATGATTGTGGCGAGTACTATATTAGTGTGTCTAGCGGT
TTGGATGGACCTAAAGACTCCAGAATATATGTCTGATATCACACGTATGTTGCAAACTAAAGGTACAAAGTTAGAGGCTC
TTTGGGATCCTGGACTAAAAATGCTTGCTTTTTCATTTGGTAGTTTTTTAGTAGCAGTAATGGTAGGTTTTTTAGGTGCT
AGGACAGCAGCTAGTTTTACTAGTCGATTACGTTCAGATATTTTTAACCATGTGATGGATTATTCTGATGCAGAAATTAA
GCGATTTTCTATCCCCTCTCTATTAACGCGCACAACTAACGACTTGACTCAGCTACAGATCCTTATTGTAATGGGAATGC
AGGTTGTTACCCGTGGACCAATTATGGCAATATGGGCCTTGACTAAAATTTGGGGTAAAAGCGATCAATGGACTGGGGCA
GCTGGAGTAGCGGTTATTATCGTTATGATATTACTTAGCGTTCTACTCTTACTTGCTTTTCCGAGACAACGTCAAATCCA
AGGTTTTACAGATGCGCTTAATGCAACTACTAGAGAGGCACTCTCTGGTGTTAGAGTTATTCGTGCCTACAATGCTGAAA
AGTATCAAACAGATAAGTTCAAACGTGAAAATGACGATTTAACAAAATTGAACCTTTTTGTTTATAGATTGATGTCGCTT
ATGAATCCTGTGATGACAGTGGTTTCATCTGGATTGACTTTAGCTATTTATTGGATTGGCTCTTATTTGATTAATGATAT
TTCTGTGCCTAAAGTTACAGGAACAAGTGTATCTGTATTGGCTGCTAAATCAGCTATCACTGATCGAGTGGATCTTTTTT
CAAACATGGTTGTTTTTTCATCTTATGCTATGCAAGTTGTTATGGGATTTATGATGATGGTAGCTATTTTTATCATCATG
CCTCGTGCTTTAGTATCGGCTAGACGTATTAATGAGGTACTAACTTTAGCCCCAACAGTAACTTTTAAAGAAAATAGTCA
TATCCAAAGTGCACCAAAAGGTCAAATTGAGTTTCAAGATGTGTCATTTCATTATAGTAAAGATTCTGAAGCGGTTATTG
AACATGTATCTTTCAAAGCAGATACTGGTCAGACAGTGGCATTTATTGGGTCTACAGGTTCTGGAAAATCCACTTTAGTC
AATTTAGTTCCACGTTTTTATGACGCCACAGAGGGGTCAATTAAACTTGATGGCATTGATATAAAGGAATACTCTCACAA
TGATTTGAATAATAAAATTGGCTATATTCCACAGAAAGCTGTTCTCTTTAGTGGGACAGTACGTTCTAATATGATTTTTG
GAGAGAGTGGCAGGGAGGAACTTAGTGATGAACAAATTTGGCAAGCACTCGAATTAGCGCAAGCTAAAGAATTTATAGAA
GCTAAAGAAAAAGGATTAGATACAGAAGTCGCTCAAGGTGGTAGTAACTTTTCAGGAGGACAAAAACAACGCTTGGCAAT
CGCACGTGCTTTAGCACGTCACCCTGAAATTCTCATTTTTGATGACTCATTTTCAGCGTTAGATTATAAAACAGATCATA
TTTTACGCCATGTGCTGAAAGAAAAAACAGCTGCTATGACGAAATTAATTGTCGCTCAACGCATTTCAACTATCATGGAT
GCTGATCTCATTTTAGTGCTAGATCAAGGTAAAGTTGTTGGGCAAGGAACACATAAGGAATTGTTATCAAATAATGAAGT
ATATCAAGAGATAGCCTATTCTCAATTGTCTAAGGAGGAATTGGAAAATGAAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(374-523)

ABC transporter transmembrane region (ABC_membrane)

(58-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

78.109

99.669

0.779

Multiple sequence alignment