Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SAH002_RS07020 Genome accession   NZ_CP011329
Coordinates   1395446..1397200 (-) Length   584 a.a.
NCBI ID   WP_000851087.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain H002     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1390446..1402200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAH002_RS06995 (SAH002_07010) mvaD 1390875..1391819 (-) 945 WP_000348821.1 diphosphomevalonate decarboxylase -
  SAH002_RS07000 (SAH002_07015) mvk 1391801..1392679 (-) 879 WP_000659719.1 mevalonate kinase -
  SAH002_RS07005 (SAH002_07020) - 1392795..1394024 (-) 1230 WP_000489529.1 HAMP domain-containing sensor histidine kinase -
  SAH002_RS07010 (SAH002_07025) - 1394024..1394710 (-) 687 WP_050882000.1 response regulator transcription factor -
  SAH002_RS07015 (SAH002_07030) - 1394712..1395338 (-) 627 WP_000449644.1 GTP pyrophosphokinase family protein -
  SAH002_RS07020 (SAH002_07035) rcrQ 1395446..1397200 (-) 1755 WP_000851087.1 ABC transporter ATP-binding protein Regulator
  SAH002_RS07025 (SAH002_07040) rcrP 1397190..1399007 (-) 1818 WP_000481813.1 ABC transporter ATP-binding protein Regulator
  SAH002_RS07030 (SAH002_07045) - 1399054..1399494 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator -
  SAH002_RS07035 (SAH002_07050) - 1399763..1401835 (+) 2073 WP_000726930.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64516.77 Da        Isoelectric Point: 7.4327

>NTDB_id=144642 SAH002_RS07020 WP_000851087.1 1395446..1397200(-) (rcrQ) [Streptococcus agalactiae strain H002]
MKTKSQKTSFFSNLSPYLKGYKLLFALAIVLATLSSLTTVIGPDRLKEMTDLMVKGLAGNIDLAKIGHIAGQLAVLYVLG
ALVSYLASFIVTTIIQKFAQGMRNAIADKINKIPLSYFDSHTQGDTLSRVTNDVDLMTQSFNQSLVTMVASTVLLVGSLI
MMFKTDWHLATTAIISVFSGFALSSIIMVKSQPLFKKQQVNLANISGYVEEIYSGHNIVTSHNARQQAKSDFQLLNDKLH
SSMWKSQFFSGIMMPLMQFIGNFGYVMVCVVGAMLAIKGTITMGTIVAFMTYVRIFTQPIGQIAQGITQLQSASAAMGRV
FEFLNETNMQEDKHKVLNFPKFKGHVSFEHVKFGYSDNKTIIHDFTSEAQPGQKVAIVGPTGAGKTTIVNLLMRFYDVNS
GSISIDDINIQDMKRSQVHDAFSMVLQDTWLFEGTIKENLIFNQTTISDDEVQEAAKAVGIHHFIMTLPKGYDTVLDDAV
TLSVGQKQLLTIARALLKNSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKDGNIIEQ
GNHDVLMSQSGFYADLYNSQFESA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=144642 SAH002_RS07020 WP_000851087.1 1395446..1397200(-) (rcrQ) [Streptococcus agalactiae strain H002]
ATGAAAACTAAATCACAAAAAACGTCTTTTTTCTCTAATTTATCTCCGTACCTCAAAGGTTACAAACTTCTTTTTGCGTT
AGCAATTGTGTTAGCAACTTTATCAAGCTTGACAACAGTTATAGGACCAGACCGTCTTAAAGAGATGACGGATCTTATGG
TAAAAGGCTTGGCTGGTAATATTGACTTAGCCAAAATCGGTCATATTGCAGGGCAATTGGCAGTATTATATGTTTTAGGT
GCATTAGTATCCTATCTAGCAAGTTTTATTGTGACGACTATTATTCAAAAATTTGCTCAAGGTATGCGCAATGCTATTGC
TGATAAAATCAATAAAATACCTTTGAGTTATTTTGATAGCCATACTCAAGGTGATACTTTATCTCGTGTTACAAATGATG
TGGATTTGATGACACAGTCTTTTAACCAAAGTTTAGTTACTATGGTTGCATCTACAGTGTTATTGGTTGGTTCATTAATT
ATGATGTTCAAAACAGATTGGCATTTAGCAACAACGGCGATTATATCGGTATTTTCAGGATTCGCTCTTTCTTCAATCAT
TATGGTGAAGAGTCAGCCTTTATTTAAAAAGCAACAGGTGAATTTGGCTAATATATCTGGATATGTAGAAGAAATTTACT
CAGGACACAACATTGTTACTAGTCATAATGCAAGACAGCAGGCTAAGTCAGATTTTCAACTATTAAATGATAAACTTCAC
AGTTCCATGTGGAAATCACAATTTTTCTCTGGAATTATGATGCCTCTGATGCAGTTTATTGGTAATTTTGGTTATGTGAT
GGTGTGTGTGGTTGGTGCCATGTTAGCTATCAAAGGAACAATTACTATGGGTACAATTGTTGCTTTTATGACCTATGTTC
GTATTTTTACACAGCCTATTGGTCAGATTGCTCAAGGAATTACACAATTACAGTCTGCTAGTGCAGCCATGGGACGTGTT
TTTGAATTTTTAAATGAAACAAATATGCAAGAGGATAAACACAAAGTGTTAAATTTTCCTAAGTTTAAGGGGCATGTGTC
CTTTGAACATGTCAAGTTTGGTTATAGTGATAACAAGACTATTATTCATGACTTTACTTCGGAGGCACAGCCTGGTCAGA
AAGTTGCTATTGTAGGACCAACTGGCGCAGGTAAAACGACAATTGTTAATTTATTGATGCGTTTTTATGATGTTAATTCA
GGTAGTATTTCCATAGATGACATCAATATCCAAGACATGAAACGTAGTCAAGTTCATGATGCTTTCTCGATGGTTCTTCA
AGATACATGGTTGTTTGAGGGAACTATTAAAGAAAATTTGATTTTTAACCAGACGACAATCAGTGATGATGAGGTTCAAG
AAGCTGCTAAGGCAGTCGGTATACATCATTTTATAATGACACTACCTAAAGGGTATGATACTGTCCTTGATGACGCTGTG
ACATTGTCAGTTGGACAAAAGCAATTATTAACCATTGCTCGAGCTCTTTTGAAAAATTCTCCCTTACTTATCTTAGATGA
AGCAACTTCATCTGTTGATACACGTACAGAAGAGTTAATTCAAAAAGCTATGGACAAACTTATGGAAGGAAGAACATCAT
TTGTTATCGCACATCGTTTATCAACGATTAAAAACGCAGACTTGATTTTGGTCATGAAAGATGGGAATATCATTGAGCAA
GGCAATCATGATGTTTTGATGTCTCAAAGTGGTTTTTATGCTGATCTGTATAATTCTCAATTCGAATCAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-299)

ABC transporter (ABC_tran)

(364-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

75.779

98.973

0.75

Multiple sequence alignment