Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SAHN016_RS04325 Genome accession   NZ_CP011325
Coordinates   836224..838029 (+) Length   601 a.a.
NCBI ID   WP_001282908.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HN016     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 831224..843029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAHN016_RS04300 (SAHN016_04300) - 831441..832142 (+) 702 WP_001263956.1 glucosamine-6-phosphate deaminase -
  SAHN016_RS04305 (SAHN016_04305) - 832223..833170 (-) 948 WP_000523787.1 glutathione S-transferase family protein -
  SAHN016_RS04310 (SAHN016_04310) - 833266..833985 (+) 720 WP_001234956.1 16S rRNA pseudouridine(516) synthase -
  SAHN016_RS04315 (SAHN016_04315) - 834058..835209 (+) 1152 WP_001086200.1 MFS transporter -
  SAHN016_RS04320 (SAHN016_04320) coiA 835261..836208 (+) 948 WP_000903642.1 competence protein CoiA Machinery gene
  SAHN016_RS04325 (SAHN016_04325) pepF 836224..838029 (+) 1806 WP_001282908.1 oligoendopeptidase F Regulator
  SAHN016_RS04330 (SAHN016_04330) - 838224..838850 (+) 627 WP_000736935.1 HAD hydrolase-like protein -
  SAHN016_RS04335 (SAHN016_04335) - 838924..839631 (+) 708 WP_000250853.1 O-methyltransferase -
  SAHN016_RS04340 (SAHN016_04340) prsA 839692..840621 (+) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -
  SAHN016_RS04345 (SAHN016_04345) - 840863..841348 (+) 486 WP_000190194.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69639.56 Da        Isoelectric Point: 4.6017

>NTDB_id=144586 SAHN016_RS04325 WP_001282908.1 836224..838029(+) (pepF) [Streptococcus agalactiae strain HN016]
MSDNRSHIEEKYQWDLTTVFATDELWETEVVELTQAIDNEKGFSGHLLDSSQSLLEITEVELDLSRRLEKVYVYASMKND
QDTTVAKYQEFQAKATALYAKFSETFSFYEPELLQLSESDYQSFLLEMPDLQKYDHFFEKIFANKPHVLSQNEEELLAGA
SEIFGAAGETFEILDNADMVFPVVKNAKGEEVELTHGNFISLMESSDRTVRKEAYQAMYSTYEQFQHTYAKTLQTNVKSQ
NFKARVNHYQSARQSALSANFIPEEVYETLIKTVNHHLPLLHRYMKLRQKVLGLDDLKMYDVYTPLSQMDMSFTYDEALK
KSEEVLAIFGEAYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVKDDKNRFAILNHYLDGFKGTIFRQTQFAEFEHAIHVADQEGQVLTSEY
LNNLYAELNEKYYGLTKEDNHFIQYEWARIPHFYYNYYVFQYATGFAAANYLAERIVNGNPEDKEAYLNYLKAGNSDYPL
NVIAKAGVDMTSADYLDAAFRVFEERLVELENLVAKGVHND

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=144586 SAHN016_RS04325 WP_001282908.1 836224..838029(+) (pepF) [Streptococcus agalactiae strain HN016]
ATGTCAGACAATCGCTCACATATTGAAGAAAAATACCAATGGGATTTAACTACTGTCTTTGCGACTGATGAGTTATGGGA
AACTGAAGTGGTAGAGCTTACTCAAGCCATCGATAATGAAAAGGGTTTTTCAGGTCATCTGTTGGACTCAAGCCAATCTT
TATTGGAGATCACGGAGGTTGAATTAGATTTATCTCGCCGTTTAGAAAAAGTTTATGTCTATGCTTCAATGAAAAATGAC
CAAGACACCACTGTTGCGAAATATCAAGAATTTCAAGCGAAAGCGACAGCGCTCTATGCAAAATTTAGTGAAACATTTTC
GTTTTACGAGCCAGAACTATTGCAACTTTCAGAGTCTGATTACCAGTCATTCCTTTTAGAAATGCCTGACTTGCAAAAAT
ATGATCATTTCTTTGAGAAAATATTTGCAAATAAACCTCATGTCTTATCTCAAAACGAAGAAGAATTGTTAGCTGGTGCT
AGTGAGATTTTTGGAGCAGCTGGTGAGACATTTGAAATCCTTGATAATGCAGATATGGTCTTCCCAGTTGTAAAAAATGC
AAAAGGTGAGGAAGTTGAGCTTACACATGGTAATTTCATTTCCCTTATGGAATCTAGCGATAGGACGGTTCGAAAAGAAG
CATATCAAGCTATGTATAGCACATATGAACAATTCCAGCATACTTACGCTAAAACATTACAAACAAATGTGAAATCTCAA
AATTTTAAGGCTCGTGTGAATCATTATCAATCAGCACGCCAATCAGCTCTATCTGCCAATTTTATTCCAGAAGAGGTCTA
CGAAACTCTAATTAAGACAGTTAATCATCATTTACCGCTCTTACATCGTTATATGAAGTTGCGTCAAAAAGTTCTTGGGC
TAGATGATTTGAAGATGTATGACGTATATACACCCCTTTCTCAAATGGATATGAGTTTTACTTATGATGAAGCTCTAAAA
AAATCAGAGGAGGTTCTAGCTATTTTTGGCGAAGCATATTCTGAACGTGTTCATCGTGCTTTTACTGAACGTTGGATTGA
TGTCCATGTTAACAAAGGAAAGAGGTCAGGCGCTTATTCAGGTGGATCTTATGACACTAATGCTTTCATGCTTCTTAACT
GGCAAGATACTTTAGATAATCTTTATACGCTGGTGCATGAAACTGGACATAGTCTACACTCGACGTTTACTCGTGAAAAT
CAACCCTATGTTTATGGTGATTATTCTATTTTCCTAGCTGAAATTGCATCAACAACAAATGAAAATATATTAACAGAAAC
CCTTTTGAAAGAAGTTAAAGATGATAAAAATCGCTTTGCAATTCTCAATCATTATTTGGACGGTTTCAAAGGAACAATTT
TTAGGCAAACACAGTTCGCTGAATTCGAACATGCCATTCATGTAGCTGATCAGGAGGGGCAAGTACTAACTAGCGAATAC
TTAAACAATCTTTACGCTGAGCTTAATGAAAAATATTATGGTTTGACTAAAGAAGATAATCATTTTATTCAATATGAATG
GGCAAGAATTCCACACTTTTACTACAATTATTATGTTTTCCAATATGCAACCGGCTTCGCAGCAGCAAATTATTTAGCAG
AGCGTATTGTAAACGGTAATCCGGAGGATAAAGAGGCCTACCTAAATTACCTTAAAGCTGGGAATTCAGATTACCCTCTA
AACGTCATTGCTAAAGCTGGTGTTGATATGACTAGTGCAGACTATCTGGATGCAGCTTTTAGAGTATTTGAAGAGCGTTT
AGTGGAACTGGAAAATCTTGTAGCAAAAGGCGTCCATAATGATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.285

99.667

0.71

Multiple sequence alignment