Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   YQ44_RS24505 Genome accession   NZ_CP011319
Coordinates   5658349..5659827 (-) Length   492 a.a.
NCBI ID   WP_071325607.1    Uniprot ID   -
Organism   Janthinobacterium sp. 1_2014MBL_MicDiv     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5653349..5664827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ44_RS24480 (YQ44_24505) - 5653981..5654463 (+) 483 WP_071325603.1 PTS sugar transporter subunit IIA -
  YQ44_RS24485 (YQ44_24510) hprK 5654500..5655435 (+) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  YQ44_RS24490 (YQ44_24515) rapZ 5655769..5656632 (+) 864 WP_071325604.1 RNase adapter RapZ -
  YQ44_RS24495 (YQ44_24520) - 5656677..5657762 (-) 1086 WP_071325605.1 enoyl-CoA hydratase/isomerase family protein -
  YQ44_RS24500 (YQ44_24525) raiA 5657917..5658279 (-) 363 WP_071325606.1 ribosome-associated translation inhibitor RaiA -
  YQ44_RS24505 (YQ44_24530) rpoN/rpoN1 5658349..5659827 (-) 1479 WP_071325607.1 RNA polymerase factor sigma-54 Machinery gene
  YQ44_RS24510 (YQ44_24535) lptB 5659832..5660587 (-) 756 WP_071325608.1 LPS export ABC transporter ATP-binding protein -
  YQ44_RS24515 (YQ44_24540) lptA 5660587..5661180 (-) 594 WP_071325609.1 lipopolysaccharide transport periplasmic protein LptA -
  YQ44_RS24520 (YQ44_24545) lptC 5661206..5661817 (-) 612 WP_071325610.1 LPS export ABC transporter periplasmic protein LptC -
  YQ44_RS24525 (YQ44_24550) - 5661862..5662395 (-) 534 WP_071325611.1 HAD hydrolase family protein -
  YQ44_RS24530 (YQ44_24555) - 5662395..5663405 (-) 1011 WP_083412032.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54460.22 Da        Isoelectric Point: 5.1802

>NTDB_id=144467 YQ44_RS24505 WP_071325607.1 5658349..5659827(-) (rpoN/rpoN1) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
SQEAPAAPAEADGFDGEAGESPAAMDGGDSDWSEASRGKAPDDEDARPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPAELDIDADELRTALALLQSFDPPGVGARNASECLALQIKRLPHIALVTRRMAIVIVE
KHLAWFAQRDFNKLKKALDCDDEDLREAQTVIRLCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=144467 YQ44_RS24505 WP_071325607.1 5658349..5659827(-) (rpoN/rpoN1) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGAAACAATCATTGCAGCTGCGCACCTCGCAGCACTTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACCCTGGAATTGCACCAGGAGCTAGAGCAGCTGTTGACGGACAATCCCCTGCTCGAGCGTCTCGACGATCCGC
TCGACCGCTCGTTGCGCCTGCTGTCCGATGGCGCCTTGAGTTCGACGGCCGCGCCGGCCGAGGCACCGCCCCAGCCACCG
AGCCAGGAGGCGCCCGCCGCGCCGGCCGAAGCGGATGGGTTTGACGGCGAGGCGGGCGAGAGTCCGGCCGCCATGGATGG
CGGCGACAGCGACTGGAGCGAAGCGAGCCGTGGCAAGGCGCCCGACGACGAAGATGCCCGTCCGCAACTCGAAGCCCATC
ACTGCACCTTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTGCTCGAATTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGACGCCCTCGACGACAATGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGCCTGCCGGCGGAGCTGGA
CATCGACGCCGACGAGCTGCGCACGGCACTGGCGCTGCTGCAAAGCTTCGATCCGCCAGGCGTGGGGGCGCGCAACGCCT
CCGAATGCCTGGCGCTGCAAATCAAGCGTTTGCCGCATATCGCCCTGGTGACGCGCCGCATGGCCATCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGACGAAGACTTGCGCGA
GGCGCAGACCGTGATTCGCCTGTGCAATCCGCACCCGGGCGCCGTGTTCGCTTCCGACGTTTCCGACTACGTGGTGCCGG
ACGTGGTTGTCAAGCGCGCGCGCAATGGCTGGCAGGTGACGCTGAACAATGACGTCATGCCGCGCCTGCGCGTCAATGCC
ATGTATGCCAACCTGCTCAAGCAGGGCAAGGGCGAAGGCGCCATGGGTGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGCTTCGACACGATCCTGCGCGTGGCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGAGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGTCTGCGTAAGTGCTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.714

100

0.622

Multiple sequence alignment