Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   YQ44_RS10090 Genome accession   NZ_CP011319
Coordinates   2302041..2304467 (+) Length   808 a.a.
NCBI ID   WP_071323263.1    Uniprot ID   A0A1I9XWI0
Organism   Janthinobacterium sp. 1_2014MBL_MicDiv     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2297041..2309467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ44_RS10080 (YQ44_10085) - 2297156..2300581 (+) 3426 WP_071323261.1 RHS repeat-associated core domain-containing protein -
  YQ44_RS28805 - 2300582..2300905 (+) 324 WP_156894763.1 hypothetical protein -
  YQ44_RS10085 (YQ44_10090) - 2301173..2301505 (+) 333 WP_071323262.1 DUF4131 domain-containing protein -
  YQ44_RS28190 - 2301499..2301897 (+) 399 WP_083411748.1 barstar family protein -
  YQ44_RS10090 (YQ44_10095) comA 2302041..2304467 (+) 2427 WP_071323263.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  YQ44_RS10095 (YQ44_10100) - 2304572..2305084 (+) 513 WP_071323264.1 hypothetical protein -
  YQ44_RS10100 (YQ44_10105) - 2305137..2305658 (+) 522 WP_071323265.1 N-acetyltransferase -
  YQ44_RS10105 (YQ44_10110) - 2305662..2306585 (-) 924 WP_071323266.1 LysR family transcriptional regulator -
  YQ44_RS10110 (YQ44_10115) - 2306739..2307500 (+) 762 WP_071326384.1 TSUP family transporter -
  YQ44_RS10115 (YQ44_10120) - 2307535..2308230 (+) 696 WP_071323267.1 HAD family phosphatase -
  YQ44_RS10120 (YQ44_10125) - 2308289..2309089 (+) 801 WP_071323268.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 86993.30 Da        Isoelectric Point: 10.0738

>NTDB_id=144458 YQ44_RS10090 WP_071323263.1 2302041..2304467(+) (comA) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MRTFILGFSAGAFWLQTQAELPAHAGAALLLACLLFLGLGYTARGGHVVLRLSLGCLFGVIFGYFWAAFLAHAALSSQLA
LQDEGEDITVVGTIASLPYHFEQGVRFNFAVEKAVSAKVPPLIALSWYAGFRNAATNEVGNVQPGERWRLTVRLQRPHGN
ANPMGFDYEVWLLEQGVRATGYVRPQPRADMPNRRLAAFVPGFGNVVEASRAALRARIVRSLEGKQYAGVIVALVVGDQR
AIPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGALWRRSFFIGWQLPLRLPAQKVAALAGALAAFLYVLLAGFGV
PAQRTLYMLMVVALALWLGRITSIGHVLCLALGAVVLLDPWAVLWPGFWLSFGAVATMLYAGVGRTAAPMSAQASRWRRL
RAAVALGAQTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPVISLIVTPLSLAGSLLPAPLSDGLLLLAHAIVQMLAQV
LDWLGARRFAVWTAPAPPMWSFCWALFGTLWLLAPRGWPHRWAGMLGWLPLLTALPSSPPPGRLWVTAFDVGQGMALLVE
THGHRLLYDTGPAYGPESDGASRVIVPYLRARGIASLDGAIISHSDLDHAGGAMSLLENIHVGWLASSLSGGHPAIEARR
QSGRPYLRCVAGQSWTWEGVHFAMLHPLPASHDDIALKPNARSCSVKITAGQHAILLAGDIEAAQEAQLVARSAEGELAA
DVLLAPHHGSGTSSTQAFLDAVHPTLAIFQVGHRNRYKHPKAQVYARYGAMGITRLRTDVEGALVLEFGEGIAVTQYRAS
RPRYWQGR

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=144458 YQ44_RS10090 WP_071323263.1 2302041..2304467(+) (comA) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGCGCACCTTCATACTCGGCTTTTCCGCTGGCGCTTTCTGGCTGCAGACGCAGGCCGAACTGCCTGCGCATGCGGGTGC
GGCGCTGCTGCTGGCCTGCTTGCTGTTCCTGGGGCTAGGCTACACCGCGCGTGGCGGGCATGTGGTCTTGCGCCTGTCCC
TGGGATGCCTGTTCGGCGTCATCTTCGGTTATTTCTGGGCCGCGTTCCTGGCGCACGCGGCGCTCTCATCCCAGCTGGCA
TTGCAAGACGAGGGCGAGGACATCACCGTCGTCGGCACCATCGCCAGCCTGCCCTACCATTTCGAGCAGGGCGTGCGCTT
CAACTTTGCCGTCGAAAAGGCGGTCAGTGCCAAGGTGCCGCCCCTGATCGCCCTGTCCTGGTATGCGGGCTTTCGCAATG
CCGCGACGAATGAAGTGGGCAATGTGCAGCCGGGCGAACGCTGGCGGCTGACGGTGCGCCTGCAGCGCCCGCATGGCAAT
GCCAATCCCATGGGTTTTGACTACGAAGTGTGGCTGCTGGAGCAGGGCGTGCGCGCCACCGGCTACGTGCGGCCGCAGCC
GCGCGCGGACATGCCGAACCGGCGCCTGGCTGCCTTCGTGCCCGGCTTCGGCAATGTGGTGGAAGCGAGCCGTGCGGCCC
TGCGCGCACGCATCGTGCGCAGCCTGGAAGGCAAGCAGTACGCGGGCGTGATCGTGGCGCTGGTGGTGGGCGACCAGCGC
GCCATCCCCCAGTCGGACTGGCAAGTGTTCAACCGCACGGGCGTCAGCCATCTGATTTCCATTTCGGGCTTGCACATCAC
CATGATCGCGGGATTGTTCGCCTTGGGTGCGGGCGCATTGTGGCGGCGCTCGTTTTTTATTGGCTGGCAACTGCCGTTGC
GGCTGCCGGCGCAAAAGGTGGCGGCGCTGGCCGGCGCGCTGGCCGCGTTTTTATATGTGCTGCTGGCCGGCTTCGGCGTC
CCGGCGCAGCGTACCTTATATATGTTGATGGTGGTGGCGCTGGCCTTGTGGCTGGGGCGCATCACCAGCATAGGCCACGT
GCTGTGCCTGGCGCTGGGTGCGGTCGTGCTGCTCGACCCCTGGGCCGTGCTGTGGCCTGGTTTCTGGCTGTCGTTCGGTG
CCGTCGCCACCATGCTGTACGCTGGCGTGGGACGCACCGCGGCGCCGATGTCGGCGCAGGCGAGCCGCTGGCGCCGCCTG
CGCGCGGCCGTGGCGCTCGGTGCGCAGACGCAATATGTGGTGACGGTGGGACTGGTGCCGCTGACGATGCTGCTGTTCTC
GCAAGTGTCGCTGGTGTCTCCTGTCGCCAATGCGCTGGCCATCCCCGTCATCAGCCTGATCGTGACGCCCTTGTCGTTGG
CGGGCAGCCTGCTGCCGGCGCCGCTGTCCGATGGTTTGCTGTTGCTGGCGCATGCCATCGTGCAGATGCTGGCGCAGGTG
CTCGATTGGCTGGGGGCGCGCCGCTTTGCCGTGTGGACGGCACCCGCGCCGCCGATGTGGAGCTTTTGCTGGGCGCTGTT
CGGCACCCTGTGGCTGCTGGCGCCGCGCGGATGGCCGCACCGCTGGGCGGGCATGCTGGGCTGGCTGCCGCTGCTGACGG
CCTTGCCGTCGAGCCCGCCGCCGGGTCGCTTGTGGGTGACGGCGTTTGACGTGGGACAAGGCATGGCCCTGCTGGTGGAA
ACGCACGGGCACCGCCTGCTGTACGACACGGGGCCAGCCTACGGCCCGGAATCGGACGGTGCCAGCCGCGTCATCGTGCC
GTATCTGCGCGCGCGCGGTATTGCCAGTCTCGATGGCGCGATCATTTCGCACAGCGATCTTGACCATGCGGGCGGCGCCA
TGTCGCTGCTGGAAAATATCCACGTGGGCTGGCTCGCTTCGTCGCTGTCCGGCGGCCACCCGGCCATCGAGGCGCGGCGG
CAGTCTGGCCGTCCCTACCTGCGCTGCGTCGCGGGCCAGAGCTGGACGTGGGAAGGCGTGCACTTCGCCATGCTGCATCC
ATTGCCCGCCAGCCACGACGACATCGCCTTGAAGCCGAACGCCCGCAGCTGCAGCGTGAAAATCACGGCCGGCCAGCACG
CTATCCTGCTGGCCGGCGACATCGAGGCGGCGCAGGAGGCGCAGCTGGTGGCGCGCTCTGCAGAAGGTGAACTGGCGGCC
GACGTGCTGCTGGCGCCGCATCACGGCAGCGGCACGTCTTCCACGCAGGCATTCCTGGACGCCGTGCATCCGACCCTGGC
GATCTTTCAGGTGGGACACCGCAACCGCTATAAACATCCGAAGGCGCAGGTGTATGCCCGCTATGGCGCGATGGGGATCA
CGCGGCTGCGCACGGATGTGGAAGGGGCGCTGGTGCTGGAGTTTGGCGAAGGTATCGCCGTGACGCAGTACCGGGCCAGC
CGGCCGCGGTATTGGCAGGGGCGGTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-185)

Competence protein (Competence)

(234-517)

Metallo-beta-lactamase superfamily (Lactamase_B)

(551-753)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I9XWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.312

100

0.49

Multiple sequence alignment