Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   YQ44_RS07590 Genome accession   NZ_CP011319
Coordinates   1705627..1707003 (+) Length   458 a.a.
NCBI ID   WP_071322857.1    Uniprot ID   A0A1I9XVD6
Organism   Janthinobacterium sp. 1_2014MBL_MicDiv     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700627..1712003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ44_RS07570 (YQ44_07570) - 1700885..1701820 (+) 936 WP_071322853.1 uracil-DNA glycosylase -
  YQ44_RS07575 (YQ44_07575) - 1701807..1702763 (+) 957 WP_071322854.1 DUF1853 family protein -
  YQ44_RS07580 (YQ44_07580) lplT 1702948..1704210 (-) 1263 WP_071322855.1 lysophospholipid transporter LplT -
  YQ44_RS07585 (YQ44_07585) alr 1704456..1705547 (+) 1092 WP_071322856.1 alanine racemase -
  YQ44_RS07590 (YQ44_07590) radA 1705627..1707003 (+) 1377 WP_071322857.1 DNA repair protein RadA Machinery gene
  YQ44_RS07595 (YQ44_07595) - 1707195..1707455 (+) 261 WP_232251300.1 PilZ domain-containing protein -
  YQ44_RS07600 (YQ44_07600) fliD 1707698..1709083 (+) 1386 WP_071322859.1 flagellar filament capping protein FliD -
  YQ44_RS07605 (YQ44_07605) - 1709211..1709981 (-) 771 WP_083411692.1 helix-turn-helix transcriptional regulator -
  YQ44_RS07610 (YQ44_07610) - 1710112..1711362 (+) 1251 WP_071322861.1 MFS transporter -
  YQ44_RS07615 (YQ44_07615) rraA 1711395..1711889 (+) 495 WP_071322862.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48971.50 Da        Isoelectric Point: 7.2493

>NTDB_id=144457 YQ44_RS07590 WP_071322857.1 1705627..1707003(+) (radA) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETVPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
ATLADLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQAIDGIKVIGVERIDEAFNKLRDHE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=144457 YQ44_RS07590 WP_071322857.1 1705627..1707003(+) (radA) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGGCAAAAGTCAAGACCATCTACACCTGCAGCGATTGCGGCGCCATCAGCAATAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAATACCATGGTGGAAACCGTGCCCGAGACGGGCGGCAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTGTCGCTCGACGATATCGACGCCATCGACGTACCCCGTTTCGGCACGGGCATCGAGGAA
TTCGACCGCGTGCTGGGGGGCGGCATGGTGGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCGAACATGTCGCACCACAAGCGCGTGCTGTATGTGAGCGGCGAGGAATCGGGCGCGCAGA
TCGCCCTGCGCGCCAAGCGCCTCGTCATCGACGCCAAGGAACTCAAGCTGCAGGCCGAGATCCAACTCGAGAAGATCCTC
GCCACGCTGGCCGACCTGAAGCCGGAAGTGGTGGTCATCGACTCGATCCAGACCGTGTATTCGGACGCCCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAGGTGCGCGAGTGTGCCGCGCAGCTCACGCGCGCGGCCAAGCAGACGGGCGTGACCATCATTC
TGGTGGGCCACGTGACGAAGGAGGGCGCGCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACGCCCATTCCAGCTTCCGCCTCGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAATGAGCTGGGCGTGTT
CGCCATGACGGAAAAGGGCTTGAAGGGCGTGTCGAACCCGTCCGCCCTGTTCCTGTCGCAGCACGACAACCAGGTGCCGG
GTTCGTGCGTGATGGTGACGCAGGAAGGCACGCGTCCACTGCTGGTGGAAATCCAGGCCCTCGTCGACACCAGCCACTTG
CCGAATGCGCGCCGCCTGTCCGTCGGCCTCGAACAAAACCGCCTGGCCATGTTGCTGGCCGTGGCGCACCGCCATGCGGG
CATCGCCGCCTTCGACCAGGATGTCTTCATCAACGCAGTCGGTGGCGTCAAGATCACGGAACCGGCGGCCGACCTGGCGG
TGTTGCTGGCGATTAACTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTCGTCGTGTTTGGCGAAGTGGGCCTGGCC
GGCGAAATCCGTCCCGCGCCGCGGGGCCAGGAGCGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCCTGGCCGTGGTGCC
CAAGTCGAACTTGCCGAAGCAAGCCATCGACGGCATCAAGGTCATCGGCGTGGAGCGCATCGACGAAGCGTTCAACAAGC
TGCGCGACCACGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I9XVD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.584

100

0.487
  radA Streptococcus pneumoniae Rx1

48.261

100

0.485
  radA Streptococcus pneumoniae D39

48.261

100

0.485
  radA Streptococcus pneumoniae R6

48.261

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.261

100

0.485
  radA Streptococcus mitis NCTC 12261

48.043

100

0.483
  radA Streptococcus mitis SK321

48.043

100

0.483

Multiple sequence alignment