Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AWB63_RS07150 Genome accession   NZ_CP014144
Coordinates   1590360..1591046 (-) Length   228 a.a.
NCBI ID   WP_038676528.1    Uniprot ID   -
Organism   Streptococcus salivarius strain JF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1585360..1596046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS07120 (AWB63_07120) - 1585526..1586101 (+) 576 WP_038676520.1 CYTH domain-containing protein -
  AWB63_RS07125 (AWB63_07125) - 1586376..1587347 (+) 972 WP_002884482.1 ribose-phosphate diphosphokinase -
  AWB63_RS07130 (AWB63_07130) - 1587351..1588463 (+) 1113 WP_038676522.1 cysteine desulfurase family protein -
  AWB63_RS07135 (AWB63_07135) - 1588465..1588812 (+) 348 WP_002884733.1 DUF1831 domain-containing protein -
  AWB63_RS07140 (AWB63_07140) - 1588955..1589614 (+) 660 WP_038676524.1 redox-sensing transcriptional repressor Rex -
  AWB63_RS07145 (AWB63_07145) - 1589607..1590302 (+) 696 WP_038676526.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  AWB63_RS07150 (AWB63_07150) radC 1590360..1591046 (-) 687 WP_038676528.1 RadC family protein Machinery gene
  AWB63_RS07155 (AWB63_07155) - 1591096..1592880 (-) 1785 WP_038676529.1 rhamnan synthesis F family protein -
  AWB63_RS07160 (AWB63_07160) - 1592877..1593911 (-) 1035 WP_038676531.1 glycosyltransferase family 2 protein -
  AWB63_RS07165 (AWB63_07165) - 1593932..1595137 (-) 1206 WP_037611840.1 ABC transporter ATP-binding protein -
  AWB63_RS07170 (AWB63_07170) - 1595137..1595946 (-) 810 WP_014634840.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25790.86 Da        Isoelectric Point: 7.0428

>NTDB_id=144432 AWB63_RS07150 WP_038676528.1 1590360..1591046(-) (radC) [Streptococcus salivarius strain JF]
MYSIVSEEAGLLPRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQQIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=144432 AWB63_RS07150 WP_038676528.1 1590360..1591046(-) (radC) [Streptococcus salivarius strain JF]
ATGTATAGTATTGTATCTGAGGAGGCAGGGCTTTTGCCTCGTGAGCGACTCTTGCAGAAGGGAGCAGAGGTTTTATCGGA
CCAGGAGTTGCTGGCGATAGTGCTGCGGACAGGGACTAAGTCTGAGTCGGTTCTATCCATGGCTAATCGTATTTTAAAAG
GGATGACGAGTTTGGCGGATTTGTCTCGTTTGTCCTTGAATGAGCTTCAGCAGATTCCTGGGATTGGGCGTGTGAAGTCC
ATTGAGCTCAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGCTGGCTCGCTCAGAGCAGATTATGTCCAG
TCAGCAGGTGGCCCGTCGTATGATGTTGGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACTTGGATACGC
AGAACCGTATTATCCAGCAAAAGACAGTCTTTATTGGTGGTGTGCGTCGTTCGATAGCTGAACCACGTGAGATTTTACAT
TATGCCTGTCATCTGATGGCAACGTCCCTGATTGTAGTTCACAATCATCCTTCGGGTGAGGCCTATCCGAGTCGAAATGA
TATTGATTTTACGCAAAAGATTAAGCGGTCTTGTGATGATTTGGGGATTTGTCTCCTCGATCATCTGATTGTTGGCAAAT
CGACCTATTATTCTTTTCGTGAGGAGAGGGAGGATTTTGAGTTATAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(105-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.929

98.246

0.579
  radC Streptococcus pneumoniae R6

58.482

98.246

0.575
  radC Streptococcus pneumoniae D39

58.482

98.246

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

58.108

97.368

0.566
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.113

92.982

0.447

Multiple sequence alignment