Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   YQ19_RS11985 Genome accession   NZ_CP011317
Coordinates   2508104..2508739 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain Carb01 63     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2503104..2513739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ19_RS11970 (YQ19_11970) - 2503810..2505054 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  YQ19_RS11975 (YQ19_11975) - 2505142..2505675 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  YQ19_RS11980 (YQ19_11980) comA 2505806..2508031 (+) 2226 WP_003113988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  YQ19_RS11985 (YQ19_11985) exbB 2508104..2508739 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  YQ19_RS11990 (YQ19_11990) - 2508736..2509176 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  YQ19_RS11995 (YQ19_11995) lpxK 2509176..2510174 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  YQ19_RS12000 (YQ19_12000) - 2510212..2510397 (+) 186 WP_003091157.1 Trm112 family protein -
  YQ19_RS12005 (YQ19_12005) kdsB 2510397..2511161 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  YQ19_RS12010 (YQ19_12010) - 2511161..2511625 (+) 465 WP_004350898.1 low molecular weight protein-tyrosine-phosphatase -
  YQ19_RS12015 (YQ19_12015) murB 2511622..2512641 (+) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=144419 YQ19_RS11985 WP_003091163.1 2508104..2508739(+) (exbB) [Pseudomonas aeruginosa strain Carb01 63]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=144419 YQ19_RS11985 WP_003091163.1 2508104..2508739(+) (exbB) [Pseudomonas aeruginosa strain Carb01 63]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCTATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment