Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AWB63_RS02850 Genome accession   NZ_CP014144
Coordinates   580463..582133 (-) Length   556 a.a.
NCBI ID   WP_038675832.1    Uniprot ID   -
Organism   Streptococcus salivarius strain JF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575463..587133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS02815 (AWB63_02815) - 575507..576199 (-) 693 WP_002884137.1 phosphoglycerate mutase -
  AWB63_RS02820 (AWB63_02820) - 576455..577390 (+) 936 WP_038675839.1 dihydroorotate oxidase -
  AWB63_RS02825 (AWB63_02825) - 577452..577652 (-) 201 WP_002883994.1 hypothetical protein -
  AWB63_RS02830 (AWB63_02830) - 577712..577987 (-) 276 WP_002884048.1 HU family DNA-binding protein -
  AWB63_RS02835 (AWB63_02835) - 578124..578696 (-) 573 WP_038675837.1 YpmS family protein -
  AWB63_RS02840 (AWB63_02840) - 578689..579564 (-) 876 WP_022496504.1 SGNH/GDSL hydrolase family protein -
  AWB63_RS02845 (AWB63_02845) - 579557..580393 (-) 837 WP_038675834.1 DegV family protein -
  AWB63_RS02850 (AWB63_02850) recN 580463..582133 (-) 1671 WP_038675832.1 DNA repair protein RecN Machinery gene
  AWB63_RS02855 (AWB63_02855) - 582142..582588 (-) 447 WP_002884132.1 arginine repressor -
  AWB63_RS02860 (AWB63_02860) - 582575..583402 (-) 828 WP_038675829.1 TlyA family RNA methyltransferase -
  AWB63_RS02865 (AWB63_02865) - 583395..584267 (-) 873 WP_037601093.1 polyprenyl synthetase family protein -
  AWB63_RS02870 (AWB63_02870) - 584267..584482 (-) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  AWB63_RS02875 (AWB63_02875) xseA 584472..585800 (-) 1329 WP_013990727.1 exodeoxyribonuclease VII large subunit -
  AWB63_RS02880 (AWB63_02880) - 585987..586748 (-) 762 WP_002884107.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62338.46 Da        Isoelectric Point: 4.5901

>NTDB_id=144396 AWB63_RS02850 WP_038675832.1 580463..582133(-) (recN) [Streptococcus salivarius strain JF]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDLLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIAKALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=144396 AWB63_RS02850 WP_038675832.1 580463..582133(-) (recN) [Streptococcus salivarius strain JF]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCCATGAATCTTATGTTGGGCGCACGTGCTTCTAGCGAAG
TCGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTCGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGTAT
CAATGGACAGATGGTCAATTTAACGACGCTTAAAGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAGCATGATCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAAACTAAGAAAGAA
TACCAAGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCCGTTCTTGAAAAGCAAAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCATTGATGA
AGGAGCGAGACAAGCTTCTTAACCATAAGCAGATTGCGGATACCTTAACCAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGTCTTTCAAATGTCCGTTCTGCTATGAATGATCTTCAATCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
TTCTGGAAATCTATCAGAAGCCTATTATGTTTTAGAAGATGTCACTAAGCAACTAGGTGACCTTTTGGATAATTTGGACT
TTGATGCTGGGCGTTTGCAAGAGATTGAACACCGCTTAGATACGATTAATGCAATTACTCGTAAATATGGTGGAACTGTT
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAGTACAATCTTCTGACTGGCAATTCCAGTTCGTCAGATGCCAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGATCTGCTAGCGTCTGCAGAGACACTACAAACGGCACGCCATCAAATAGCTA
AGGCTCTTGAAGCTGAAATTAAGAACGAGTTATGCGACCTTTACATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAA
GGGAAATTTAACCGTGATGGCAATGAGCAGGTTGAGTTTTACATTTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTTGCTTCAGGAGGAGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGACAAAACAA
GTATTGTCTTTGATGAGGTTGATACTGGCGTTTCAGGTCGTGTTGCCCAAGCCATCGCTCAGAAAATTCATAAGATTGGG
AGTCATGGTCAGGTTTTGGCCATCAGTCACCTTCCACAAGTTATTGCCATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGTGATAATGAGACAACTGTCTCTCGTGTTCGTCTCTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAATGTGACGGAGGCTGCCTTGAGCCAGGCAAGAGCCTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.154

100

0.455