Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AL502_RS17490 Genome accession   NZ_CP014111
Coordinates   3209730..3210398 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain FDAARGOS_144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3204730..3215398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL502_RS17460 (AL502_17955) rfaQ 3204907..3205965 (-) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -
  AL502_RS17465 (AL502_17960) waaA 3206379..3207656 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AL502_RS17470 (AL502_17965) coaD 3207664..3208143 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  AL502_RS17475 (AL502_17970) mutM 3208182..3208991 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AL502_RS17480 (AL502_17975) rpmG 3209089..3209256 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  AL502_RS17485 (AL502_17980) rpmB 3209277..3209513 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  AL502_RS17490 (AL502_17985) radC 3209730..3210398 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  AL502_RS17495 (AL502_17990) coaBC 3210570..3211790 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AL502_RS17500 (AL502_17995) dut 3211768..3212226 (+) 459 WP_000976070.1 dUTP diphosphatase -
  AL502_RS17505 (AL502_18000) slmA 3212333..3212929 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  AL502_RS17510 (AL502_18005) pyrE 3212966..3213607 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AL502_RS17515 (AL502_18010) rph 3213668..3214384 (-) 717 WP_001247093.1 ribonuclease PH -
  AL502_RS17525 (AL502_18020) yicC 3214511..3215374 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=144334 AL502_RS17490 WP_001297375.1 3209730..3210398(-) (radC) [Escherichia coli strain FDAARGOS_144]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=144334 AL502_RS17490 WP_001297375.1 3209730..3210398(-) (radC) [Escherichia coli strain FDAARGOS_144]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAGCACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496