Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   UQ48_RS08895 Genome accession   NZ_CP011289
Coordinates   1904527..1905132 (+) Length   201 a.a.
NCBI ID   WP_053530142.1    Uniprot ID   -
Organism   Salmonella enterica subsp. diarizonae strain 11-01853     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899527..1910132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UQ48_RS08875 (UQ48_08865) - 1899922..1901682 (-) 1761 WP_053509640.1 AAA family ATPase -
  UQ48_RS08880 (UQ48_08870) matP 1901868..1902320 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  UQ48_RS08885 (UQ48_08875) ompA 1902392..1903444 (-) 1053 WP_063390952.1 porin OmpA -
  UQ48_RS08890 (UQ48_08880) sulA 1903801..1904310 (-) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  UQ48_RS08895 (UQ48_08885) sxy/tfoX 1904527..1905132 (+) 606 WP_053530142.1 TfoX/Sxy family DNA transformation protein Regulator
  UQ48_RS08900 (UQ48_08890) yccS 1905119..1907272 (-) 2154 WP_063390309.1 YccS family putative transporter -
  UQ48_RS08905 (UQ48_08895) - 1907291..1907737 (-) 447 WP_001261216.1 YccF domain-containing protein -
  UQ48_RS08910 (UQ48_08900) helD 1907861..1909915 (+) 2055 WP_063390310.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23129.84 Da        Isoelectric Point: 9.0103

>NTDB_id=144270 UQ48_RS08895 WP_053530142.1 1904527..1905132(+) (sxy/tfoX) [Salmonella enterica subsp. diarizonae strain 11-01853]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIAGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=144270 UQ48_RS08895 WP_053530142.1 1904527..1905132(+) (sxy/tfoX) [Salmonella enterica subsp. diarizonae strain 11-01853]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGGCGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGCTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761

Multiple sequence alignment