Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   XM40_RS07830 Genome accession   NZ_CP011278
Coordinates   1581136..1582035 (+) Length   299 a.a.
NCBI ID   WP_003154279.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-S60     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1576136..1587035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS07810 (XM40_07810) - 1576827..1578530 (+) 1704 WP_043867087.1 hypothetical protein -
  XM40_RS07815 (XM40_07815) - 1578527..1578808 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  XM40_RS07820 (XM40_07820) sucC 1578983..1580140 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  XM40_RS07825 (XM40_07825) sucD 1580169..1581071 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  XM40_RS07830 (XM40_07830) dprA 1581136..1582035 (+) 900 WP_003154279.1 DNA-processing protein DprA Machinery gene
  XM40_RS07835 (XM40_07835) topA 1582217..1584292 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  XM40_RS07840 (XM40_07840) trmFO 1584357..1585664 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  XM40_RS07845 (XM40_07845) xerC 1585734..1586651 (+) 918 WP_043867088.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32844.89 Da        Isoelectric Point: 7.8285

>NTDB_id=144113 XM40_RS07830 WP_003154279.1 1581136..1582035(+) (dprA) [Bacillus velezensis strain L-S60]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFFSDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=144113 XM40_RS07830 WP_003154279.1 1581136..1582035(+) (dprA) [Bacillus velezensis strain L-S60]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTTTCGGATCCGCATCCATTAACTGTTTTATCAGAGGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGTTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

40.502

93.311

0.378

Multiple sequence alignment