Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   XM40_RS06975 Genome accession   NZ_CP011278
Coordinates   1364700..1364984 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-S60     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359700..1369984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS06955 (XM40_06955) - 1360935..1361855 (+) 921 WP_043867056.1 ketopantoate reductase family protein -
  XM40_RS06960 (XM40_06960) - 1361885..1363117 (-) 1233 WP_043867057.1 aminopeptidase -
  XM40_RS19645 - 1363218..1363352 (-) 135 WP_003154559.1 protein YkpC -
  XM40_RS06965 (XM40_06965) mreBH 1363424..1364431 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  XM40_RS06975 (XM40_06975) abrB 1364700..1364984 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  XM40_RS06980 (XM40_06980) - 1365157..1366461 (+) 1305 WP_014304932.1 ATP-binding protein -
  XM40_RS06985 (XM40_06985) - 1366463..1367290 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase family protein -
  XM40_RS06990 (XM40_06990) ktrC 1367331..1367996 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  XM40_RS06995 (XM40_06995) ade 1368145..1369878 (+) 1734 WP_043867058.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=144112 XM40_RS06975 WP_024085249.1 1364700..1364984(+) (abrB) [Bacillus velezensis strain L-S60]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=144112 XM40_RS06975 WP_024085249.1 1364700..1364984(+) (abrB) [Bacillus velezensis strain L-S60]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment