Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   XM40_RS03995 Genome accession   NZ_CP011278
Coordinates   801155..801946 (+) Length   263 a.a.
NCBI ID   WP_043866933.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-S60     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 796155..806946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS03975 (XM40_03975) - 798150..799034 (+) 885 WP_014304656.1 PhzF family phenazine biosynthesis isomerase -
  XM40_RS03980 (XM40_03980) - 799111..799695 (+) 585 WP_003155509.1 nitroreductase -
  XM40_RS03985 (XM40_03985) - 799734..799925 (-) 192 WP_003155508.1 YfhD family protein -
  XM40_RS19040 - 799996..800106 (-) 111 WP_003155504.1 YfhE family protein -
  XM40_RS03990 (XM40_03990) - 800164..801063 (-) 900 WP_043866932.1 TIGR01777 family oxidoreductase -
  XM40_RS03995 (XM40_03995) recX 801155..801946 (+) 792 WP_043866933.1 recombination regulator RecX Regulator
  XM40_RS04000 (XM40_04000) - 801953..802264 (+) 312 WP_003155501.1 YfhH family protein -
  XM40_RS04005 (XM40_04005) - 802411..803604 (+) 1194 WP_025650229.1 MFS transporter -
  XM40_RS04010 (XM40_04010) - 803644..804033 (-) 390 WP_024085032.1 DUF2606 family protein -
  XM40_RS04015 (XM40_04015) - 803996..804907 (-) 912 WP_003155497.1 serine protease -
  XM40_RS04020 (XM40_04020) - 805052..805204 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  XM40_RS04025 (XM40_04025) - 805328..805597 (+) 270 WP_003155492.1 YfhJ family protein -
  XM40_RS04030 (XM40_04030) - 805729..806256 (+) 528 WP_003155490.1 SH3 domain-containing protein -
  XM40_RS04035 (XM40_04035) - 806342..806677 (+) 336 WP_015388524.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31000.23 Da        Isoelectric Point: 6.6262

>NTDB_id=144094 XM40_RS03995 WP_043866933.1 801155..801946(+) (recX) [Bacillus velezensis strain L-S60]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYHYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=144094 XM40_RS03995 WP_043866933.1 801155..801946(+) (recX) [Bacillus velezensis strain L-S60]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATATCGGATGCGGTCTGAAAAAGAAGTC
CGGGATCACCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACCATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787

Multiple sequence alignment