Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   XM40_RS01700 Genome accession   NZ_CP011278
Coordinates   309847..310284 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-S60     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 304847..315284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS19965 - 305426..305551 (-) 126 Protein_287 hypothetical protein -
  XM40_RS01670 (XM40_01670) - 305704..306906 (+) 1203 WP_043866820.1 GTP-binding protein -
  XM40_RS01675 (XM40_01675) - 306971..308107 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  XM40_RS01680 (XM40_01680) - 308122..308556 (+) 435 WP_043866821.1 RDD family protein -
  XM40_RS01685 (XM40_01685) - 308628..308948 (+) 321 WP_014304315.1 YckD family protein -
  XM40_RS01690 (XM40_01690) - 309167..309386 (+) 220 Protein_292 family 1 glycosylhydrolase -
  XM40_RS01695 (XM40_01695) nin/comJ 309427..309825 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  XM40_RS01700 (XM40_01700) nucA/comI 309847..310284 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  XM40_RS01705 (XM40_01705) hxlB 310643..311200 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  XM40_RS01710 (XM40_01710) hxlA 311197..311832 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  XM40_RS01715 (XM40_01715) - 312064..312426 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=144089 XM40_RS01700 WP_003156588.1 309847..310284(-) (nucA/comI) [Bacillus velezensis strain L-S60]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=144089 XM40_RS01700 WP_003156588.1 309847..310284(-) (nucA/comI) [Bacillus velezensis strain L-S60]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment