Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   GAH_RS00875 Genome accession   NZ_CP011267
Coordinates   140237..141781 (-) Length   514 a.a.
NCBI ID   WP_048094262.1    Uniprot ID   A0A0F7IFZ2
Organism   Geoglobus ahangari strain 234     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 135237..146781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAH_RS00850 (GAH_00168) - 135850..137298 (+) 1449 WP_048094258.1 dihydropteroate synthase-like protein -
  GAH_RS00855 (GAH_00169) - 137275..137748 (-) 474 WP_048096608.1 pyruvoyl-dependent arginine decarboxylase -
  GAH_RS00860 (GAH_00170) - 137859..138773 (-) 915 WP_048094259.1 archaeosine biosynthesis radical SAM protein RaSEA -
  GAH_RS00865 (GAH_00171) - 138770..139576 (-) 807 WP_048094260.1 rhomboid family intramembrane serine protease -
  GAH_RS00870 (GAH_00172) - 139603..140262 (-) 660 WP_048094261.1 hypothetical protein -
  GAH_RS00875 (GAH_00173) epdL 140237..141781 (-) 1545 WP_048094262.1 type II/IV secretion system ATPase subunit Machinery gene
  GAH_RS00880 (GAH_00174) - 141837..142124 (+) 288 WP_245604034.1 transcriptional regulator -
  GAH_RS00885 (GAH_00175) - 142369..143046 (+) 678 WP_048094263.1 DUF6293 family protein -
  GAH_RS00890 (GAH_00176) udg 143039..143647 (-) 609 WP_048094264.1 type-4 uracil-DNA glycosylase -
  GAH_RS00895 (GAH_00177) - 143685..144998 (-) 1314 WP_048094265.1 FAD-dependent oxidoreductase -
  GAH_RS00900 (GAH_00178) - 145056..145646 (-) 591 WP_048094266.1 DUF4350 domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 59240.22 Da        Isoelectric Point: 6.0513

>NTDB_id=144041 GAH_RS00875 WP_048094262.1 140237..141781(-) (epdL) [Geoglobus ahangari strain 234]
MKMVKYACGNMVMMNNLKEFAERLLDSPVPEGYEEVDAYPVYGDHVFSAIKILEKDLDQLYYVIEPPLDEFEEARHEILR
RLEFVLPSLPHRKDKVETLKDAYERIIESMKLRIEDDYHYHALFYYVLRDTILYGPITPLMKDRLIEDISCNGYNKPIYI
FHRNYQNLRTNITFSEDELDNFVIKLAQMSGKHISIAEPMLDAALPDGSRIQMTLAREVTDHGSTFTIRKFRDEPVTPID
LIAWGTFSVEQMAYLWLCIENKKSLIFAGGTASGKTTSMNAVSLFIPKNSKIVTIEDTREVMLPHENWIPAVTREGGKTI
DMYDLLRAALRQRPEYIIVGEVRGKEALTLFQAMSTGHTTYSTLHADSVNGVIHRLENPPINVPRAMIEALDIVSIQAQV
FLGRKRVRRNMEIAEIIGVDPHTKIMRTTTVFAWDSTKDEHVMVGSSKALEEIRTLRSWTRKELEQELKTREKVLQYMLD
NNIREFREVARIIQTYQIDPEKVIRLVGGSEGGA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=144041 GAH_RS00875 WP_048094262.1 140237..141781(-) (epdL) [Geoglobus ahangari strain 234]
ATGAAAATGGTTAAATACGCCTGCGGGAACATGGTAATGATGAACAACCTCAAGGAGTTCGCGGAGAGGCTTCTGGACTC
GCCCGTTCCAGAGGGCTACGAGGAGGTTGATGCATATCCCGTTTACGGAGATCACGTTTTCTCTGCAATCAAGATTCTTG
AGAAGGATCTCGATCAGCTCTACTACGTTATTGAGCCCCCCCTTGATGAGTTTGAGGAGGCGAGGCATGAAATTCTGAGG
AGGCTTGAGTTCGTCCTCCCCTCCCTCCCCCACAGGAAGGACAAGGTGGAGACGCTGAAGGACGCTTATGAGCGAATTAT
CGAGTCCATGAAGCTCAGGATCGAGGACGACTACCACTATCATGCTCTCTTCTACTACGTTCTCAGGGACACGATCCTCT
ACGGCCCCATCACCCCCCTCATGAAGGACCGCCTGATAGAAGACATCTCCTGCAACGGCTACAACAAGCCCATCTACATC
TTCCACCGCAACTACCAGAACCTGAGAACGAACATCACCTTCAGTGAGGATGAGCTGGACAACTTCGTCATCAAGCTCGC
CCAGATGTCTGGAAAGCACATAAGCATAGCCGAGCCCATGCTCGACGCAGCACTTCCAGACGGCTCCAGAATCCAGATGA
CCTTGGCAAGAGAAGTAACAGACCACGGATCCACCTTCACCATAAGAAAGTTCAGAGATGAACCTGTAACACCAATAGAC
CTTATCGCCTGGGGAACGTTCAGCGTCGAGCAGATGGCCTACCTCTGGCTCTGCATAGAGAACAAAAAGTCTCTGATCTT
CGCCGGAGGAACTGCGAGCGGAAAAACCACCTCCATGAACGCCGTCTCCCTCTTCATCCCCAAGAACTCCAAGATAGTCA
CCATAGAGGACACGAGGGAGGTCATGCTCCCCCACGAGAACTGGATTCCCGCAGTGACGAGAGAGGGCGGGAAGACCATA
GACATGTACGACCTGCTCAGAGCGGCTTTGAGACAGAGGCCCGAGTACATAATAGTCGGTGAGGTCAGAGGTAAGGAAGC
ACTGACACTCTTCCAGGCAATGAGCACGGGCCACACCACCTACTCAACTCTCCACGCCGACAGCGTTAATGGAGTCATCC
ACAGGCTGGAAAACCCACCCATAAACGTCCCCAGAGCAATGATAGAAGCCTTAGACATAGTCAGCATCCAGGCCCAGGTC
TTCCTGGGCAGGAAGAGGGTGAGGAGGAACATGGAGATCGCAGAGATAATAGGCGTCGACCCCCACACCAAGATCATGAG
AACAACAACCGTCTTCGCCTGGGACTCGACCAAGGACGAACACGTGATGGTCGGCAGCTCAAAGGCCCTCGAGGAGATAA
GAACCCTGAGAAGCTGGACGAGAAAGGAGCTCGAACAGGAGCTCAAAACCCGCGAAAAAGTCCTCCAGTACATGCTCGAC
AACAACATCCGCGAGTTCAGAGAGGTAGCGAGAATAATCCAGACCTACCAGATTGATCCCGAGAAGGTGATCAGGCTTGT
TGGGGGCTCTGAAGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(143-381)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7IFZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

51.12

95.525

0.488

Multiple sequence alignment