Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEA0421_RS14530 Genome accession   NZ_CP011259
Coordinates   2933668..2934273 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Agona str. 460004 2-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2928668..2939273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEA0421_RS14515 (SEEA0421_013645) helD 2928885..2930939 (-) 2055 WP_000420499.1 DNA helicase IV -
  SEEA0421_RS14520 (SEEA0421_013640) - 2931063..2931509 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEEA0421_RS14525 (SEEA0421_013635) yccS 2931528..2933681 (+) 2154 WP_000950862.1 YccS family putative transporter -
  SEEA0421_RS14530 (SEEA0421_013630) sxy/tfoX 2933668..2934273 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEA0421_RS14535 (SEEA0421_013625) sulA 2934490..2934999 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  SEEA0421_RS14540 (SEEA0421_013620) ompA 2935356..2936414 (+) 1059 WP_001747676.1 porin OmpA -
  SEEA0421_RS14545 (SEEA0421_013615) matP 2936486..2936938 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEA0421_RS14550 (SEEA0421_013610) - 2937124..2938884 (+) 1761 WP_000156447.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=144023 SEEA0421_RS14530 WP_001202375.1 2933668..2934273(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Agona str. 460004 2-1]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=144023 SEEA0421_RS14530 WP_001202375.1 2933668..2934273(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Agona str. 460004 2-1]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment