Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   MB84_RS02790 Genome accession   NZ_CP011253
Coordinates   597305..598795 (-) Length   496 a.a.
NCBI ID   WP_046290669.1    Uniprot ID   -
Organism   Pandoraea oxalativorans strain DSM 23570     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 592305..603795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MB84_RS02760 (MB84_07390) mutY 592327..593484 (+) 1158 WP_046290665.1 A/G-specific adenine glycosylase -
  MB84_RS02765 (MB84_07395) rapZ 593501..594373 (-) 873 WP_046290666.1 RNase adapter RapZ -
  MB84_RS02770 (MB84_07400) - 594553..594885 (-) 333 WP_046290667.1 PsiF family protein -
  MB84_RS02775 (MB84_07405) hprK 595059..596024 (-) 966 WP_039395509.1 HPr(Ser) kinase/phosphatase -
  MB84_RS02780 (MB84_07410) ptsN 596115..596570 (-) 456 WP_046290668.1 PTS IIA-like nitrogen regulatory protein PtsN -
  MB84_RS02785 (MB84_07415) raiA 596807..597163 (-) 357 WP_039395515.1 ribosome-associated translation inhibitor RaiA -
  MB84_RS02790 (MB84_07420) rpoN/rpoN1 597305..598795 (-) 1491 WP_046290669.1 RNA polymerase factor sigma-54 Machinery gene
  MB84_RS02795 (MB84_07425) lptB 598889..599659 (-) 771 WP_046293335.1 LPS export ABC transporter ATP-binding protein -
  MB84_RS02800 (MB84_07430) lptA 599685..600377 (-) 693 WP_046290670.1 lipopolysaccharide transport periplasmic protein LptA -
  MB84_RS02805 (MB84_07435) lptC 600374..601051 (-) 678 WP_046290671.1 LPS export ABC transporter periplasmic protein LptC -
  MB84_RS02810 (MB84_07440) - 601076..601561 (-) 486 WP_046293336.1 HAD hydrolase family protein -
  MB84_RS02815 (MB84_07445) - 601683..602663 (-) 981 WP_046290672.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55091.97 Da        Isoelectric Point: 5.1803

>NTDB_id=143927 MB84_RS02790 WP_046290669.1 597305..598795(-) (rpoN/rpoN1) [Pandoraea oxalativorans strain DSM 23570]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERGSSSSGSNDN
GPDAANGHDEARELDGEARFDDNAPDNGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKASPRDRAL
VEFLIESLDEDGYLGSLLDEIQAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASAVRTLSLRIV
TDHLELLAARDYTRLRRLLGVGEDGLRAAHQLIRSLDPFPGSAYGAPQADYVVPDVLVRKQGSGWTAELNPEVMPRLRIN
EMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHEST
ISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAK
YREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=143927 MB84_RS02790 WP_046290669.1 597305..598795(-) (rpoN/rpoN1) [Pandoraea oxalativorans strain DSM 23570]
ATGAAACCGACTCTTCAACTCCGCACCTCGCAGCACCTGACCCTCACGCCGCAGTTGCAGCAATCGATCCGGTTGTTGCA
ACTGTCGACGCTCGAACTTCAGCAGGAAGTCGAGCACGCCCTCACCCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCCGGTTCGGTACGTGTGGGCACAGACGGGTCGCTACGCAACGAGCGAGGTTCGTCGTCCAGCGGTTCGAACGACAAC
GGCCCCGACGCCGCTAACGGTCACGACGAAGCACGCGAACTCGATGGCGAGGCCCGCTTCGACGACAACGCGCCGGATAA
CGGCAGCGACTGGAGCCTGAACGACTTCGCCCGCTCCGGCAGCGCATCGGACGACGACGACAATGCGCGTCCGCAGCTGC
ACGTCGACCATCCCAATCTGCGTGAACATCTGCTGGCTCAACTGCGCCTGACCAAGGCCTCACCGCGCGACCGCGCGCTG
GTGGAATTCCTGATCGAATCCCTGGACGAAGACGGCTACCTTGGTAGCCTGCTCGACGAGATTCAGGCCGAAATGCCCGA
GGAGCTGGCGCTCGAAACGGAAGAGATCAACGCGGCGCTGGCGCTACTGCAAAGTTTCGACCCGGCGGGCGTGGGCGCCC
GCAGCCCGGCCGAGTGCCTGCGCCTGCAGCTTCAGCGACTGCCCGCAAGCGCTGTGCGTACGCTGTCGCTGCGCATCGTC
ACCGATCACCTGGAACTGCTGGCCGCGCGCGATTACACGCGTTTGCGCCGCCTGCTGGGTGTCGGCGAAGACGGCCTGCG
CGCCGCGCATCAGCTGATTCGTTCGCTGGACCCGTTCCCGGGCTCGGCTTACGGCGCGCCCCAGGCCGACTACGTCGTGC
CGGACGTGCTGGTACGCAAGCAGGGGAGCGGCTGGACGGCGGAGCTGAATCCGGAAGTGATGCCGCGTCTACGCATCAAC
GAGATGTATGCGCGCATTCTCCGAAATAACCGGAACGATCCGGGAACCGGCAACCTCCAACAGCAGTTGCAGGAAGCGCG
CTGGCTGATCAAGAACATCCAGCAACGCTTCGATACGATCCTGCGGGTGGCGCAAGCCATTGTCGAGCGTCAAAAGAACT
TCTTCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACATGAATCCACG
ATTTCACGGGTGACAACGAGTAAGTACATGCTCACTCCATTTGGAACCTTCGAGCTTAAGTACTTCTTCGGATCGCACGT
GGCAACGGAAGCCGGAGGCGCTGCGTCATCGACCGCTATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGACCCGC
AGAGCCCCCTTTCCGATAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGTTTTGTGGTGGCGCGGCGCACTGTCGCGAAG
TACCGCGAGGCCATGCGAATCCCCGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

69.062

100

0.698

Multiple sequence alignment